PDB Chemical Component RSQ

Ideal Model

Chemical Description

Name 5-formylcytidine 5'-(dihydrogen phosphate)
Formula C10 H14 N3 O9 P
Formal charge 0
Molecular weight 351.207 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HOP3
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-azanyl-5-methanoyl-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1C=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1C=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=C(C(=NC(=O)N1[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)C=O
InChI descriptor InChI=1S/C10H14N3O9P/c11-8-4(2-14)1-13(10(17)12-8)9-7(16)6(15)5(22-9)3-21-23(18,19)20/h1-2,5-7,9,15-16H,3H2,(H2,11,12,17)(H2,18,19,20)/t5-,6-,7-,9-/m1/s1
InChIKey descriptor ANRZHYHASGTOLD-JXOAFFINSA-N

Status Information

Last modified 2011-06-04
Created 2010-01-25
Release status REL
Model PDB code 2KRY
Processing site RCSB