PDB Chemical Component QBT

Ideal Model

Chemical Description

Name [(2R,3S,5R)-3-HYDROXY-5-[(5S)-5-METHYL-2,4-DIOXO-1,3-DIAZINAN-1-YL]OXOLAN-2-YL]METHYL DIHYDROGEN PHOSPHATE
Formula C10 H17 N2 O8 P
Formal charge 0
Molecular weight 324.224 g/mol
Component type DNA LINKING

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms O3P
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[(5S)-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) C[CH]1CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C[C@H]1CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H17N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(13)7(20-8)4-19-21(16,17)18/h5-8,13H,2-4H2,1H3,(H,11,14,15)(H2,16,17,18)/t5-,6-,7+,8+/m0/s1
InChIKey descriptor PGRQANKWVMVANW-RULNZFCNSA-N

Status Information

Last modified 2022-06-13
Created 2010-12-08
Release status REL
Model PDB code 2Y1J
Processing site EBI