PDB Chemical Component PYO

Ideal Model

Chemical Description

Name 1-(BETA-D-RIBOFURANOSYL)-PYRIMIDIN-2-ONE-5'-PHOSPHATE
Formula C9 H13 N2 O8 P
Formal charge 0
Molecular weight 308.182 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 33
Chiral atom count 4
Chiral atoms C4' C3' C1' C2'
Observed leaving atoms OP3 HO3
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 1-(5-O-phosphono-beta-D-ribofuranosyl)pyrimidin-2(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4-dihydroxy-5-(2-oxopyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC=NC2=O
SMILES (CACTVS) O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC=NC2=O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H13N2O8P/c12-6-5(4-18-20(15,16)17)19-8(7(6)13)11-3-1-2-10-9(11)14/h1-3,5-8,12-13H,4H2,(H2,15,16,17)/t5-,6-,7-,8-/m1/s1
InChIKey descriptor LBWXMAFPEFFHIJ-WCTZXXKLSA-N

Status Information

Last modified 2011-06-04
Created 2000-09-13
Release status REL
Processing site EBI