PDB Chemical Component PY5

Ideal Model

Chemical Description

Name 2-[O-PHOSPHONOPYRIDOXYL]-AMINO-PENTANOIC ACID
Synonyms VITAMIN B6 COMPLEXED WITH 2-AMINO-PENTANOIC ACID
Formula C13 H21 N2 O7 P
Formal charge 0
Molecular weight 348.289 g/mol
Component type NON-POLYMER

Chemical features

Atom count 44
Chiral atom count 1
Chiral atoms CA
Bond count 44
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-norvaline
Systematic name (OpenEye OEToolkits) (2S)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]pentanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CCC[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O
SMILES (CACTVS) CCC[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O
Stereo SMILES (OpenEye) CCC[C@@H](C(=O)O)NCc1c(cnc(c1O)C)COP(=O)(O)O
InChI descriptor InChI=1S/C13H21N2O7P/c1-3-4-11(13(17)18)15-6-10-9(7-22-23(19,20)21)5-14-8(2)12(10)16/h5,11,15-16H,3-4,6-7H2,1-2H3,(H,17,18)(H2,19,20,21)/t11-/m0/s1
InChIKey descriptor YYAMSLLSQINIQO-NSHDSACASA-N

Status Information

Last modified 2020-06-17
Created 1999-08-18
Release status REL
Model PDB code 1CQ7
Processing site RCSB