PDB Chemical Component OAD

Ideal Model

Chemical Description

Name 2'-O-ACETYL ADENOSINE-5-DIPHOSPHORIBOSE
Formula C17 H25 N5 O15 P2
Formal charge 0
Molecular weight 601.352 g/mol
Component type RNA LINKING

Chemical features

Atom count 64
Chiral atom count 10
Chiral atoms PA C4' C3' C2' C1' PB C4D C3D C2D C1D
Bond count 67
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) (2S,3R,4R,5R)-5-({[(R)-{[(S)-{[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}methyl)-2,4-dihydroxytetrahydrofuran-3-yl acetate (non-preferred name)
Systematic name (OpenEye OEToolkits) [(2S,3R,4R,5R)-5-[[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxymethyl]-2,4-dihydroxy-oxolan-3-yl] ethanoate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)O[C@H]1[C@@H](O)O[C@H](CO[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34)[C@H]1O
SMILES (CACTVS) CC(=O)O[CH]1[CH](O)O[CH](CO[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34)[CH]1O
Stereo SMILES (OpenEye) CC(=O)O[C@@H]1[C@@H]([C@H](O[C@@H]1O)CO[P@@](=O)(O)O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O
InChI descriptor InChI=1S/C17H25N5O15P2/c1-6(23)34-13-11(25)8(36-17(13)27)3-33-39(30,31)37-38(28,29)32-2-7-10(24)12(26)16(35-7)22-5-21-9-14(18)19-4-20-15(9)22/h4-5,7-8,10-13,16-17,24-27H,2-3H2,1H3,(H,28,29)(H,30,31)(H2,18,19,20)/t7-,8-,10-,11-,12-,13-,16-,17+/m1/s1
InChIKey descriptor BFNOPXRXIQJDHO-DLFWLGJNSA-N

Status Information

Last modified 2012-01-05
Created 2002-06-28
Release status REL
Model PDB code 1M2N
Processing site RCSB