PDB Chemical Component NTT

Ideal Model

Chemical Description

Name [(1R,5R,7R,8S)-8-hydroxy-3-methyl-7-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate
Formula C12 H18 N3 O9 P
Formal charge 0
Molecular weight 379.260 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 43
Chiral atom count 4
Chiral atoms C2' C4' C1' C3'
Observed leaving atoms HO3' OP3
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) [(1R,5R,7R,8S)-8-hydroxy-3-methyl-7-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-2,6-dioxa-3-azabicyclo[3.2.1]oct-5-yl]methyl dihydrogen phosphate
Systematic name (OpenEye OEToolkits) [(1R,5R,7R,8S)-3-methyl-7-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-8-oxidanyl-2,6-dioxa-3-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN1C[C@]2(CO[P](O)(O)=O)O[C@H]([C@H](O1)[C@@H]2O)N3C=C(C)C(=O)NC3=O
SMILES (CACTVS) CN1C[C]2(CO[P](O)(O)=O)O[CH]([CH](O1)[CH]2O)N3C=C(C)C(=O)NC3=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CN(O3)C)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H18N3O9P/c1-6-3-15(11(18)13-9(6)17)10-7-8(16)12(23-10,4-14(2)24-7)5-22-25(19,20)21/h3,7-8,10,16H,4-5H2,1-2H3,(H,13,17,18)(H2,19,20,21)/t7-,8+,10-,12-/m1/s1
InChIKey descriptor OFICQOIAWJEWLX-UJYYTQATSA-N

Status Information

Last modified 2015-08-14
Created 2014-08-05
Release status REL
Model PDB code 4U6K
Processing site PDBJ