PDB Chemical Component LSH

Ideal Model

Chemical Description

Name [(1R,5R,7R,8S)-7-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-8-oxidanyl-3,3-bis(oxidanylidene)-6-oxa-3$l^{6}-thia-2-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate
Formula C11 H16 N3 O10 P S
Formal charge 0
Molecular weight 413.298 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 42
Chiral atom count 4
Chiral atoms C4' C2' C1' C3'
Bond count 44
Aromatic bond count 0

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(1R,5R,7R,8S)-7-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-8-oxidanyl-3,3-bis(oxidanylidene)-6-oxa-3$l^{6}-thia-2-azabicyclo[3.2.1]octan-5-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@@]3(CO[P](O)(O)=O)C[S](=O)(=O)N[C@@H]2[C@@H]3O)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[C]3(CO[P](O)(O)=O)C[S](=O)(=O)N[CH]2[CH]3O)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@H]3[C@@H]([C@@](O2)(CS(=O)(=O)N3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H16N3O10PS/c1-5-2-14(10(17)12-8(5)16)9-6-7(15)11(24-9,3-23-25(18,19)20)4-26(21,22)13-6/h2,6-7,9,13,15H,3-4H2,1H3,(H,12,16,17)(H2,18,19,20)/t6-,7+,9-,11+/m1/s1
InChIKey descriptor BWIQWTUDCFCICX-SZVQBCOZSA-N

Status Information

Last modified 2016-07-15
Created 2015-08-05
Release status REL
Model PDB code 5AXE
Processing site PDBJ