PDB Chemical Component JDT

Ideal Model

Chemical Description

Name 2'-deoxy-5-ethyluridine 5'-(dihydrogen phosphate)
Formula C11 H17 N2 O8 P
Formal charge 0
Molecular weight 336.235 g/mol
Component type DNA linking
Nonstandard Parent Id DT

Chemical features

Atom count 39
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-ethyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(5-ethyl-2,4-dioxo-pyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CCC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) CCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) CCC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C11H17N2O8P/c1-2-6-4-13(11(16)12-10(6)15)9-3-7(14)8(21-9)5-20-22(17,18)19/h4,7-9,14H,2-3,5H2,1H3,(H,12,15,16)(H2,17,18,19)/t7-,8+,9+/m0/s1
InChIKey descriptor PKJQLAZOOFOCPH-DJLDLDEBSA-N

Status Information

Last modified 2011-06-04
Created 2011-04-01
Release status REL
Model PDB code 2RRQ
Processing site PDBJ