PDB Chemical Component HPD

Ideal Model

Chemical Description

Name 1-HYDROXY-PENTANE-3,4-DIOL-5-PHOSPHATE
Synonyms OPEN FORM OF 2'-DEOXY-RIBOFURANOSE-5'-PHOSPHATE
Formula C5 H13 O7 P
Formal charge 0
Molecular weight 216.126 g/mol
Component type NON-POLYMER

Chemical features

Atom count 26
Chiral atom count 2
Chiral atoms C3' C4'
Bond count 25
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2-deoxy-5-O-phosphono-D-erythro-pentitol
Systematic name (OpenEye OEToolkits) [(2R,3S)-2,3,5-trihydroxypentyl] dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OCC[C@H](O)[C@H](O)CO[P](O)(O)=O
SMILES (CACTVS) OCC[CH](O)[CH](O)CO[P](O)(O)=O
Stereo SMILES (OpenEye) C(CO)[C@@H]([C@@H](COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C5H13O7P/c6-2-1-4(7)5(8)3-12-13(9,10)11/h4-8H,1-3H2,(H2,9,10,11)/t4-,5+/m0/s1
InChIKey descriptor YCHBTVQJICBXEI-CRCLSJGQSA-N

Status Information

Last modified 2020-06-17
Created 2001-06-20
Release status REL
Model PDB code 1JCL
Processing site RCSB