PDB Chemical Component HGR

Ideal Model

Chemical Description

Name Hygromycin A
Formula C23 H29 N O12
Formal charge 0
Molecular weight 511.476 g/mol
Component type NON-POLYMER

Chemical features

Atom count 65
Chiral atom count 10
Chiral atoms C10 C17 C19 C7 C8 C9 C18 C20 C21 C22
Bond count 68
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (2E)-3-{4-[(6-deoxy-beta-D-arabino-hexofuranosyl-5-ulose)oxy]-3-oxocyclohexa-1,4-dien-1-yl}-2-methyl-N-[(3aS,4R,5R,6S,7R,7aR)-4,6,7-trihydroxyhexahydro-1,3-benzodioxol-5-yl]prop-2-enamide
Systematic name (OpenEye OEToolkits) (E)-N-[(3aS,4R,5R,6S,7R,7aR)-4,6,7-tris(oxidanyl)-3a,4,5,6,7,7a-hexahydro-1,3-benzodioxol-5-yl]-3-[4-[(2S,3S,4S,5S)-5-ethanoyl-3,4-bis(oxidanyl)oxolan-2-yl]oxy-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]-2-methyl-prop-2-enamide

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)[C@H]1O[C@@H](OC2=CCC(=CC2=O)/C=C(C)/C(=O)N[C@@H]3[C@H](O)[C@@H](O)[C@H]4OCO[C@H]4[C@@H]3O)[C@@H](O)[C@@H]1O
SMILES (CACTVS) CC(=O)[CH]1O[CH](OC2=CCC(=CC2=O)C=C(C)C(=O)N[CH]3[CH](O)[CH](O)[CH]4OCO[CH]4[CH]3O)[CH](O)[CH]1O
Stereo SMILES (OpenEye) C/C(=C\C1=CC(=O)C(=CC1)O[C@H]2[C@H]([C@@H]([C@H](O2)C(=O)C)O)O)/C(=O)N[C@@H]3[C@@H]([C@H]([C@@H]4[C@H]([C@@H]3O)OCO4)O)O
InChI descriptor InChI=1S/C23H29NO12/c1-8(22(32)24-13-14(27)16(29)21-20(15(13)28)33-7-34-21)5-10-3-4-12(11(26)6-10)35-23-18(31)17(30)19(36-23)9(2)25/h4-6,13-21,23,27-31H,3,7H2,1-2H3,(H,24,32)/b8-5+/t13-,14+,15-,16-,17+,18+,19-,20+,21-,23-/m1/s1
InChIKey descriptor LDTRVHIISSLXOQ-IIHALWDASA-N

Status Information

Last modified 2015-11-06
Created 2015-09-08
Release status REL
Model PDB code 5DM7
Processing site EBI