PDB Chemical Component GPX

Ideal Model

Chemical Description

Name GUANOSINE 5'-DIPHOSPHATE 2':3'-CYCLIC MONOPHOSPHATE
Formula C10 H14 N5 O13 P3
Formal charge 0
Molecular weight 505.165 g/mol
Component type NON-POLYMER

Chemical features

Atom count 45
Chiral atom count 6
Chiral atoms P1 PA C4' C1' C2' C3'
Bond count 48
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) [(2S,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl trihydrogen diphosphate
Systematic name (OpenEye OEToolkits) [(1R,3S,5R,6R,8R)-8-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-6-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P@@](O)(=O)O[P](O)(O)=O)[C@H]4O[P@@](O)(=O)O[C@@H]34
SMILES (CACTVS) NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH]4O[P](O)(=O)O[CH]34
Stereo SMILES (OpenEye) c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)CO[P@](=O)(O)OP(=O)(O)O)O[P@@](=O)(O4)O)N=C(NC2=O)N
InChI descriptor InChI=1S/C10H14N5O13P3/c11-10-13-7-4(8(16)14-10)12-2-15(7)9-6-5(26-31(22,23)27-6)3(25-9)1-24-30(20,21)28-29(17,18)19/h2-3,5-6,9H,1H2,(H,20,21)(H,22,23)(H2,17,18,19)(H3,11,13,14,16)/t3-,5-,6-,9-/m1/s1
InChIKey descriptor NGYWTCOGOZELRS-UUOKFMHZSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1CH8
Processing site RCSB