PDB Chemical Component DUZ

Ideal Model

Chemical Description

Name 5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
Formula C17 H20 N3 O9 P
Formal charge 0
Molecular weight 441.329 g/mol
Component type DNA linking
Nonstandard Parent Id DU

Chemical features

Atom count 50
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3 HOP3
Bond count 52
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 5-(benzylcarbamoyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[2,4-bis(oxidanylidene)-5-[(phenylmethyl)carbamoyl]pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccccc3)C(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C(C(=O)NCc3ccccc3)C(=O)NC2=O
Stereo SMILES (OpenEye) c1ccc(cc1)CNC(=O)C2=CN(C(=O)NC2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O
InChI descriptor InChI=1S/C17H20N3O9P/c21-12-6-14(29-13(12)9-28-30(25,26)27)20-8-11(16(23)19-17(20)24)15(22)18-7-10-4-2-1-3-5-10/h1-5,8,12-14,21H,6-7,9H2,(H,18,22)(H,19,23,24)(H2,25,26,27)/t12-,13+,14+/m0/s1
InChIKey descriptor RDNHEZYEIYMTCG-BFHYXJOUSA-N

Status Information

Last modified 2012-11-16
Created 2012-11-07
Release status REL
Model PDB code 4HQX
Processing site RCSB