PDB Chemical Component DUD

Ideal Model

Chemical Description

Name DEOXYURIDINE-5'-DIPHOSPHATE
Formula C9 H14 N2 O11 P2
Formal charge 0
Molecular weight 388.162 g/mol
Component type NON-POLYMER

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C1' C3' C4' PA
Bond count 39
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxyuridine 5'-(trihydrogen diphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P@@](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=CC(=O)NC2=O)CO[P@](=O)(O)OP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14N2O11P2/c12-5-3-8(11-2-1-7(13)10-9(11)14)21-6(5)4-20-24(18,19)22-23(15,16)17/h1-2,5-6,8,12H,3-4H2,(H,18,19)(H,10,13,14)(H2,15,16,17)/t5-,6+,8+/m0/s1
InChIKey descriptor QHWZTVCCBMIIKE-SHYZEUOFSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1DUC
Processing site RCSB