PDB Chemical Component DM6

Ideal Model

Chemical Description

Name 4'-EPIDOXORUBICIN
Synonyms 4'-EPIADRIAMYCIN
Formula C27 H30 N O11
Formal charge 1
Molecular weight 544.527 g/mol
Component type NON-POLYMER

Chemical features

Atom count 69
Chiral atom count 6
Chiral atoms C7 C9 C1' C3' C4' C5'
Bond count 73
Aromatic bond count 12

Chemical Identifiers

Systematic name (ACDLabs) (1S,3S)-3,5,12-trihydroxy-3-(hydroxyacetyl)-10-methoxy-6,11-dioxo-1,2,3,4,6,11-hexahydrotetracen-1-yl 3-ammonio-2,3,6-trideoxy-alpha-L-arabino-hexopyranoside
Systematic name (OpenEye OEToolkits) [(2S,3R,4S,6R)-3-hydroxy-2-methyl-6-[[(1S,3S)-3,5,12-trihydroxy-3-(2-hydroxyethanoyl)-10-methoxy-6,11-dioxo-2,4-dihydro-1H-tetracen-1-yl]oxy]oxan-4-yl]azanium

Chemical Descriptors

Stereo SMILES (CACTVS) COc1cccc2C(=O)c3c(O)c4C[C@](O)(C[C@H](O[C@H]5C[C@H]([NH3+])[C@@H](O)[C@H](C)O5)c4c(O)c3C(=O)c12)C(=O)CO
SMILES (CACTVS) COc1cccc2C(=O)c3c(O)c4C[C](O)(C[CH](O[CH]5C[CH]([NH3+])[CH](O)[CH](C)O5)c4c(O)c3C(=O)c12)C(=O)CO
Stereo SMILES (OpenEye) C[C@H]1[C@@H]([C@H](C[C@@H](O1)O[C@H]2C[C@@](Cc3c2c(c4c(c3O)C(=O)c5cccc(c5C4=O)OC)O)(C(=O)CO)O)[NH3+])O
InChI descriptor InChI=1S/C27H29NO11/c1-10-22(31)13(28)6-17(38-10)39-15-8-27(36,16(30)9-29)7-12-19(15)26(35)21-20(24(12)33)23(32)11-4-3-5-14(37-2)18(11)25(21)34/h3-5,10,13,15,17,22,29,31,33,35-36H,6-9,28H2,1-2H3/p+1/t10-,13-,15-,17-,22-,27-/m0/s1
InChIKey descriptor AOJJSUZBOXZQNB-VTZDEGQISA-O

Status Information

Last modified 2021-03-01
Created 1999-07-08
Release status REL
Model PDB code 1D54
Processing site RCSB