PDB Chemical Component DDU

Ideal Model

Chemical Description

Name 2'-5'DIDEOXYURIDINE
Formula C9 H12 N2 O4
Formal charge 0
Molecular weight 212.203 g/mol
Component type NON-POLYMER

Chemical features

Atom count 27
Chiral atom count 3
Chiral atoms C1' C3' C4'
Bond count 28
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2',5'-dideoxyuridine
Systematic name (OpenEye OEToolkits) 1-[(2R,4S,5R)-4-hydroxy-5-methyl-oxolan-2-yl]pyrimidine-2,4-dione

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@H]1O[C@H](C[C@@H]1O)N2C=CC(=O)NC2=O
SMILES (CACTVS) C[CH]1O[CH](C[CH]1O)N2C=CC(=O)NC2=O
Stereo SMILES (OpenEye) C[C@@H]1[C@H](C[C@@H](O1)N2C=CC(=O)NC2=O)O
InChI descriptor InChI=1S/C9H12N2O4/c1-5-6(12)4-8(15-5)11-3-2-7(13)10-9(11)14/h2-3,5-6,8,12H,4H2,1H3,(H,10,13,14)/t5-,6+,8-/m1/s1
InChIKey descriptor FDCFKLBIAIKUKB-GKROBHDKSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 1DDU
Processing site RCSB