PDB Chemical Component CLY

Ideal Model

Chemical Description

Name CLINDAMYCIN
Formula C18 H33 Cl N2 O5 S
Formal charge 0
Molecular weight 424.983 g/mol
Component type NON-POLYMER

Chemical features

Atom count 60
Chiral atom count 9
Chiral atoms C1 C2 C3 C4 C5 C7 C8 C11 C13
Bond count 61
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) methyl 7-chloro-6,7,8-trideoxy-6-{[(4R)-1-methyl-4-propyl-L-prolyl]amino}-1-thio-L-threo-alpha-D-galacto-octopyranoside
Systematic name (OpenEye OEToolkits) (1R,2S,4R)-N-[(1S,2S)-2-chloro-1-[(2R,3R,4S,5R,6R)-3,4,5-trihydroxy-6-methylsulfanyl-oxan-2-yl]propyl]-1-methyl-4-propyl-pyrrolidine-2-carboxamide

Chemical Descriptors

Stereo SMILES (CACTVS) CCC[C@@H]1C[C@H](N(C)C1)C(=O)N[C@H]([C@H](C)Cl)[C@H]2O[C@H](SC)[C@H](O)[C@@H](O)[C@H]2O
SMILES (CACTVS) CCC[CH]1C[CH](N(C)C1)C(=O)N[CH]([CH](C)Cl)[CH]2O[CH](SC)[CH](O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) CCC[C@@H]1C[C@H]([N@@](C1)C)C(=O)N[C@@H]([C@@H]2[C@@H]([C@@H]([C@H]([C@H](O2)SC)O)O)O)[C@H](C)Cl
InChI descriptor InChI=1S/C18H33ClN2O5S/c1-5-6-10-7-11(21(3)8-10)17(25)20-12(9(2)19)16-14(23)13(22)15(24)18(26-16)27-4/h9-16,18,22-24H,5-8H2,1-4H3,(H,20,25)/t9-,10+,11-,12+,13-,14+,15+,16+,18+/m0/s1
InChIKey descriptor KDLRVYVGXIQJDK-AWPVFWJPSA-N

Status Information

Last modified 2011-06-04
Created 2001-09-18
Release status REL
Model PDB code 1JZX
Processing site RCSB