PDB Chemical Component CDW

Ideal Model

Chemical Description

Name (4R)-3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-1,3-DIAZABICYCLO[2.2.0]HEX-5-EN-2-ONE
Formula C9 H13 N2 O7 P
Formal charge 0
Molecular weight 292.182 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 32
Chiral atom count 4
Chiral atoms C4' C3' C1' C6
Observed leaving atoms OP3
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) (4R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,3-diazabicyclo[2.2.0]hex-5-en-2-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[(4R)-6-oxo-1,5-diazabicyclo[2.2.0]hex-2-en-5-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2[C@@H]3C=CN3C2=O
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2[CH]3C=CN3C2=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2[C@@H]3C=CN3C2=O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H13N2O7P/c12-5-3-8(11-7-1-2-10(7)9(11)13)18-6(5)4-17-19(14,15)16/h1-2,5-8,12H,3-4H2,(H2,14,15,16)/t5-,6+,7+,8+/m0/s1
InChIKey descriptor MFBBRWBWVQMJIV-LXGUWJNJSA-N

Status Information

Last modified 2011-06-04
Created 2009-08-14
Release status REL
Model PDB code 2WQ6
Processing site EBI