PDB Chemical Component CDP

Ideal Model

Chemical Description

Name CYTIDINE-5'-DIPHOSPHATE
Formula C9 H15 N3 O11 P2
Formal charge 0
Molecular weight 403.176 g/mol
Component type NON-POLYMER

Chemical features

Atom count 40
Chiral atom count 5
Chiral atoms PA C4' C3' C2' C1'
Bond count 41
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) cytidine 5'-(trihydrogen diphosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl phosphono hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P@](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)CO[P@@](=O)(O)OP(=O)(O)O)O)O
InChI descriptor InChI=1S/C9H15N3O11P2/c10-5-1-2-12(9(15)11-5)8-7(14)6(13)4(22-8)3-21-25(19,20)23-24(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,19,20)(H2,10,11,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1
InChIKey descriptor ZWIADYZPOWUWEW-XVFCMESISA-N

Status Information

Last modified 2011-06-04
Created 1999-07-15
Release status REL
Model PDB code 1GX1
Processing site RCSB