PDB Chemical Component CDM

Ideal Model

Chemical Description

Name 4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL
Formula C14 H25 N3 O14 P2
Formal charge 0
Molecular weight 521.308 g/mol
Component type NON-POLYMER

Chemical features

Atom count 58
Chiral atom count 8
Chiral atoms C1' C2' C3' C4' PA PB C2M C3M
Bond count 59
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(R)-hydroxy{[(S)-hydroxy{[(2R,3S)-2,3,4-trihydroxy-3-methylbutyl]oxy}phosphoryl]oxy}phosphoryl]cytidine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [hydroxy-[(2R,3S)-2,3,4-trihydroxy-3-methyl-butoxy]phosphoryl] hydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@](O)(CO)[C@H](O)CO[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N
SMILES (CACTVS) C[C](O)(CO)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) C[C@](CO)([C@@H](CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O)O)O
InChI descriptor InChI=1S/C14H25N3O14P2/c1-14(23,6-18)8(19)5-29-33(26,27)31-32(24,25)28-4-7-10(20)11(21)12(30-7)17-3-2-9(15)16-13(17)22/h2-3,7-8,10-12,18-21,23H,4-6H2,1H3,(H,24,25)(H,26,27)(H2,15,16,22)/t7-,8-,10-,11-,12-,14+/m1/s1
InChIKey descriptor YFAUKWZNPVBCFF-XHIBXCGHSA-N

Status Information

Last modified 2011-06-04
Created 2001-05-22
Release status REL
Model PDB code 1INI
Processing site RCSB