PDB Chemical Component CDC

Ideal Model

Chemical Description

Name [2-CYTIDYLATE-O'-PHOSPHONYLOXYL]-ETHYL-TRIMETHYL-AMMONIUM
Formula C14 H26 N4 O11 P2
Formal charge 0
Molecular weight 488.324 g/mol
Component type NON-POLYMER

Chemical features

Atom count 57
Chiral atom count 5
Chiral atoms C1' C2' C3' C4' PA
Bond count 58
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5'-O-[(S)-hydroxy({[2-(trimethylammonio)ethoxy]phosphinato}oxy)phosphoryl]cytidine
Systematic name (OpenEye OEToolkits) [[(2R,3S,4R,5R)-5-(4-amino-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 2-trimethylazaniumylethyl phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[N+](C)(C)CCO[P]([O-])(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)N2C=CC(=NC2=O)N
SMILES (CACTVS) C[N+](C)(C)CCO[P]([O-])(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)N2C=CC(=NC2=O)N
Stereo SMILES (OpenEye) C[N+](C)(C)CCO[P@@](=O)([O-])O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)N2C=CC(=NC2=O)N)O)O
InChI descriptor InChI=1S/C14H26N4O11P2/c1-18(2,3)6-7-26-30(22,23)29-31(24,25)27-8-9-11(19)12(20)13(28-9)17-5-4-10(15)16-14(17)21/h4-5,9,11-13,19-20H,6-8H2,1-3H3,(H3-,15,16,21,22,23,24,25)/t9-,11-,12-,13-/m1/s1
InChIKey descriptor RZZPDXZPRHQOCG-OJAKKHQRSA-N

Status Information

Last modified 2011-06-04
Created 2001-09-25
Release status REL
Model PDB code 1JYL
Processing site RCSB