PDB Chemical Component AD7

Ideal Model

Chemical Description

Name octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside
Synonyms 2-deoxy-Fuc-3-amino-Gal-H-antigen disaccharide; amino-deoxy-acceptor
Formula C20 H39 N O8
Formal charge 0
Molecular weight 421.526 g/mol
Component type NON-POLYMER

Chemical features

Atom count 68
Chiral atom count 9
Chiral atoms CAJ CAR CAP CAN CAL CAA CAE CAD CAC
Bond count 69
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) octyl 3-amino-3-deoxy-2-O-(2,6-dideoxy-alpha-L-lyxo-hexopyranosyl)-beta-D-galactopyranoside
Systematic name (OpenEye OEToolkits) (2S,3S,4S,6S)-6-[(2R,3R,4S,5R,6R)-4-amino-5-hydroxy-6-(hydroxymethyl)-2-octoxy-oxan-3-yl]oxy-2-methyl-oxane-3,4-diol

Chemical Descriptors

Stereo SMILES (CACTVS) CCCCCCCCO[C@@H]1O[C@H](CO)[C@H](O)[C@H](N)[C@H]1O[C@H]2C[C@H](O)[C@H](O)[C@H](C)O2
SMILES (CACTVS) CCCCCCCCO[CH]1O[CH](CO)[CH](O)[CH](N)[CH]1O[CH]2C[CH](O)[CH](O)[CH](C)O2
Stereo SMILES (OpenEye) CCCCCCCCO[C@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)N)O[C@H]2C[C@@H]([C@@H]([C@@H](O2)C)O)O
InChI descriptor InChI=1S/C20H39NO8/c1-3-4-5-6-7-8-9-26-20-19(16(21)18(25)14(11-22)28-20)29-15-10-13(23)17(24)12(2)27-15/h12-20,22-25H,3-11,21H2,1-2H3/t12-,13-,14+,15-,16-,17+,18-,19+,20+/m0/s1
InChIKey descriptor GHTLMVRROQXELT-HTYYFBMYSA-N

Status Information

Last modified 2020-06-17
Created 2008-01-04
Release status REL
Model PDB code 2RJ4
Processing site RCSB