PDB Chemical Component 8PY

Ideal Model

Chemical Description

Name [(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(pyren-2-yl)amino]-6-oxidanylidene-1~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate
Formula C28 H25 N6 O8 P
Formal charge 0
Molecular weight 604.507 g/mol
Component type DNA linking
Nonstandard Parent Id DG

Chemical features

Atom count 68
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP2 O1
Bond count 74
Aromatic bond count 24

Chemical Identifiers

Systematic name (OpenEye OEToolkits) [(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(pyren-2-yl)amino]-6-oxidanylidene-1~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC(=O)N(c1cc2ccc3cccc4ccc(c1)c2c34)c5nc6C(=O)NC(=Nc6n5[C@H]7C[C@H](O)[C@@H](CO[P](O)(O)=O)O7)N
SMILES (CACTVS) CC(=O)N(c1cc2ccc3cccc4ccc(c1)c2c34)c5nc6C(=O)NC(=Nc6n5[CH]7C[CH](O)[CH](CO[P](O)(O)=O)O7)N
Stereo SMILES (OpenEye) CC(=O)N(c1cc2ccc3cccc4c3c2c(c1)cc4)c5nc6c(n5[C@H]7C[C@@H]([C@H](O7)COP(=O)(O)O)O)N=C(NC6=O)N
InChI descriptor InChI=1S/C28H25N6O8P/c1-13(35)33(18-9-16-7-5-14-3-2-4-15-6-8-17(10-18)23(16)22(14)15)28-30-24-25(31-27(29)32-26(24)37)34(28)21-11-19(36)20(42-21)12-41-43(38,39)40/h2-10,19-21,36H,11-12H2,1H3,(H2,38,39,40)(H3,29,31,32,37)/t19-,20+,21+/m0/s1
InChIKey descriptor SOPYCICHZOSXGU-PWRODBHTSA-N

Status Information

Last modified 2019-05-07
Created 2016-04-22
Release status REL
Model PDB code 5g35
Processing site EBI