PDB Chemical Component 6HB

Ideal Model

Chemical Description

Name 2'-deoxy-N-[(2S)-2-hydroxybut-3-en-1-yl]adenosine 5'-(dihydrogen phosphate)
Formula C14 H20 N5 O7 P
Formal charge 0
Molecular weight 401.312 g/mol
Component type DNA LINKING
Nonstandard Parent Id DA

Chemical features

Atom count 47
Chiral atom count 4
Chiral atoms C4' C1' CB C3'
Observed leaving atoms H4 OP3 H1
Bond count 49
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-[(2S)-2-hydroxybut-3-en-1-yl]adenosine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-oxidanyl-5-[6-[[(2S)-2-oxidanylbut-3-enyl]amino]purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H](CNc1ncnc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C=C
SMILES (CACTVS) O[CH](CNc1ncnc2n(cnc12)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C=C
Stereo SMILES (OpenEye) C=C[C@@H](CNc1c2c(ncn1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C14H20N5O7P/c1-2-8(20)4-15-13-12-14(17-6-16-13)19(7-18-12)11-3-9(21)10(26-11)5-25-27(22,23)24/h2,6-11,20-21H,1,3-5H2,(H,15,16,17)(H2,22,23,24)/t8-,9-,10+,11+/m0/s1
InChIKey descriptor KQKWEOLKIBWBEK-UKKRHICBSA-N

Status Information

Last modified 2014-10-03
Created 2014-04-18
Release status REL
Model PDB code 2MNX
Processing site RCSB