PDB Chemical Component 5DK

Ideal Model

Chemical Description

Name (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine
Synonyms PLP-DArg
Formula C14 H22 N5 O7 P
Formal charge 0
Molecular weight 403.328 g/mol
Component type NON-POLYMER

Chemical features

Atom count 49
Chiral atom count 1
Chiral atoms CA
Bond count 49
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) (E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine
Systematic name (OpenEye OEToolkits) (2R)-5-carbamimidamido-2-[(E)-[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]pentanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(C=N[C@H](CCCNC(N)=N)C(O)=O)c1O
SMILES (CACTVS) Cc1ncc(CO[P](O)(O)=O)c(C=N[CH](CCCNC(N)=N)C(O)=O)c1O
Stereo SMILES (OpenEye) [H]/N=C(\N)/NCCC[C@H](C(=O)O)/N=C/c1c(cnc(c1O)C)COP(=O)(O)O
InChI descriptor InChI=1S/C14H22N5O7P/c1-8-12(20)10(9(5-18-8)7-26-27(23,24)25)6-19-11(13(21)22)3-2-4-17-14(15)16/h5-6,11,20H,2-4,7H2,1H3,(H,21,22)(H4,15,16,17)(H2,23,24,25)/b19-6+/t11-/m1/s1
InChIKey descriptor PFHOMURYEGODJI-WZZUDYRYSA-N

Status Information

Last modified 2021-03-01
Created 2015-09-09
Release status REL
Model PDB code 5DJ3
Processing site RCSB