PDB Chemical Component 5CY

Ideal Model

Chemical Description

Name 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-y l}-3,3-dimethyl-3H-indolium
Synonyms N,N'-(dipropyl)-tetramethylindodicarbocyanine
Formula C31 H39 N2 O2
Formal charge 1
Molecular weight 471.654 g/mol
Component type NON-POLYMER

Chemical features

Atom count 74
Chiral atom count 0
Bond count 77
Aromatic bond count 12

Chemical Identifiers

Systematic name (ACDLabs) 1-(3-hydroxypropyl)-2-{(1E,3E,5E)-5-[1-(3-hydroxypropyl)-3,3-dimethyl-1,3-dihydro-2H-indol-2-ylidene]penta-1,3-dien-1-yl}-3,3-dimethyl-3H-indolium
Systematic name (OpenEye OEToolkits) 3-[(2E)-2-[(2E,4E)-5-[3,3-dimethyl-1-(3-oxidanylpropyl)indol-1-ium-2-yl]penta-2,4-dienylidene]-3,3-dimethyl-indol-1-yl]propan-1-ol

Chemical Descriptors

Stereo SMILES (CACTVS) CC1(C)C(=C/C=C/C=C/C2=[N+](CCCO)c3ccccc3C2(C)C)\N(CCCO)c4ccccc14
SMILES (CACTVS) CC1(C)C(=CC=CC=CC2=[N+](CCCO)c3ccccc3C2(C)C)N(CCCO)c4ccccc14
Stereo SMILES (OpenEye) CC1(c2ccccc2[N+](=C1/C=C/C=C/C=C/3\C(c4ccccc4N3CCCO)(C)C)CCCO)C
InChI descriptor InChI=1S/C31H39N2O2/c1-30(2)24-14-8-10-16-26(24)32(20-12-22-34)28(30)18-6-5-7-19-29-31(3,4)25-15-9-11-17-27(25)33(29)21-13-23-35/h5-11,14-19,34-35H,12-13,20-23H2,1-4H3/q+1
InChIKey descriptor VFBDPICHYNKCQJ-UHFFFAOYSA-N

Status Information

Last modified 2020-06-17
Created 2013-04-17
Release status REL
Model PDB code 4JRP
Processing site RCSB