PDB Chemical Component 47C

Ideal Model

Chemical Description

Name 2'-DEOXY-N-(PROP-2-EN-1-YLOXY)CYTIDINE 5'-(DIHYDROGEN PHOSPHATE)
Formula C12 H18 N3 O8 P
Formal charge 0
Molecular weight 363.260 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 42
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP3
Bond count 43
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-N-(prop-2-en-1-yloxy)cytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[2-oxo-4-(prop-2-enoxyamino)pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=NC2=O)NOCC=C
SMILES (CACTVS) O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=NC2=O)NOCC=C
Stereo SMILES (OpenEye) C=CCONC1=NC(=O)N(C=C1)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H18N3O8P/c1-2-5-21-14-10-3-4-15(12(17)13-10)11-6-8(16)9(23-11)7-22-24(18,19)20/h2-4,8-9,11,16H,1,5-7H2,(H,13,14,17)(H2,18,19,20)/t8-,9+,11+/m0/s1
InChIKey descriptor KSHWPNLXBHANGL-IQJOONFLSA-N

Status Information

Last modified 2019-04-29
Created 2010-08-10
Release status REL
Model PDB code 2XO7
Processing site EBI