PDB Chemical Component 3ME

Ideal Model

Chemical Description

Name 2'-O-{2-[2-(dimethylamino)ethoxy]ethyl}-5-methyluridine 5'-(dihydrogen phosphate)
Formula C16 H28 N3 O10 P
Formal charge 0
Molecular weight 453.381 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 58
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms HO3' OXT HXT
Bond count 59
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-O-{2-[2-(dimethylamino)ethoxy]ethyl}-5-methyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3R,4R,5R)-4-[2-(2-dimethylaminoethyloxy)ethoxy]-5-[5-methyl-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CN(C)CCOCCO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O
SMILES (CACTVS) CN(C)CCOCCO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCCOCCN(C)C
InChI descriptor InChI=1S/C16H28N3O10P/c1-10-8-19(16(22)17-14(10)21)15-13(27-7-6-26-5-4-18(2)3)12(20)11(29-15)9-28-30(23,24)25/h8,11-13,15,20H,4-7,9H2,1-3H3,(H,17,21,22)(H2,23,24,25)/t11-,12-,13-,15-/m1/s1
InChIKey descriptor ZEPAZACIEWQAFL-RGCMKSIDSA-N

Status Information

Last modified 2011-10-27
Created 2003-03-04
Release status REL
Model PDB code 1NZG
Processing site RCSB