PDB Chemical Component 1DP

Ideal Model

Chemical Description

Name N1-deaza-adenosine-5'-monophosphate
Synonyms 3-(5-O-phosphono-beta-D-ribofuranosyl)-3H-imidazo[4,5-b]pyridin-7-amine
Formula C11 H15 N4 O7 P
Formal charge 0
Molecular weight 346.233 g/mol
Component type RNA LINKING

Chemical features

Atom count 38
Chiral atom count 4
Chiral atoms C4' C1' C2' C3'
Observed leaving atoms O3P O3' HO3P HO3'
Bond count 40
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) 3-(5-O-phosphono-beta-D-ribofuranosyl)-3H-imidazo[4,5-b]pyridin-7-amine
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-5-(7-aminoimidazo[5,4-b]pyridin-3-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) Nc1ccnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O
SMILES (CACTVS) Nc1ccnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O
Stereo SMILES (OpenEye) c1cnc2c(c1N)ncn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C11H15N4O7P/c12-5-1-2-13-10-7(5)14-4-15(10)11-9(17)8(16)6(22-11)3-21-23(18,19)20/h1-2,4,6,8-9,11,16-17H,3H2,(H2,12,13)(H2,18,19,20)/t6-,8-,9-,11-/m1/s1
InChIKey descriptor MKNCBTMEOTYSIQ-PNHWDRBUSA-N

Status Information

Last modified 2021-03-13
Created 2009-07-01
Release status REL
Model PDB code 3I2Q
Processing site RCSB