PDB Chemical Component 12A

Ideal Model

Chemical Description

Name 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE
Formula C16 H23 N6 O11 P S
Formal charge 0
Molecular weight 538.426 g/mol
Component type RNA LINKING
Nonstandard Parent Id A

Chemical features

Atom count 58
Chiral atom count 6
Chiral atoms C4' C3' C2' C1' CA CB
Observed leaving atoms OP3 HO3'
Bond count 60
Aromatic bond count 10

Chemical Identifiers

Systematic name (ACDLabs) (2S,3R)-2-({[9-{(2R,3R,4S,5R)-3,4-dihydroxy-5-[(phosphonooxy)methyl]tetrahydrofuran-2-yl}-2-(methylsulfanyl)-9H-purin-6-yl]carbamoyl}amino)-3-hydroxybutanoic acid (non-preferred name)
Systematic name (OpenEye OEToolkits) (2S,3R)-2-[[9-[(2R,3R,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]-2-methylsulfanyl-purin-6-yl]carbamoylamino]-3-hydroxy-butanoic acid

Chemical Descriptors

Stereo SMILES (CACTVS) CSc1nc(NC(=O)N[C@@H]([C@@H](C)O)C(O)=O)c2ncn([C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O)c2n1
SMILES (CACTVS) CSc1nc(NC(=O)N[CH]([CH](C)O)C(O)=O)c2ncn([CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O)c2n1
Stereo SMILES (OpenEye) C[C@H]([C@@H](C(=O)O)NC(=O)Nc1c2c(nc(n1)SC)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)O
InChI descriptor InChI=1S/C16H23N6O11PS/c1-5(23)7(14(26)27)18-15(28)19-11-8-12(21-16(20-11)35-2)22(4-17-8)13-10(25)9(24)6(33-13)3-32-34(29,30)31/h4-7,9-10,13,23-25H,3H2,1-2H3,(H,26,27)(H2,29,30,31)(H2,18,19,20,21,28)/t5-,6-,7+,9-,10-,13-/m1/s1
InChIKey descriptor CVAJCPGRFVTHBT-DWVDDHQFSA-N

Status Information

Last modified 2011-06-04
Created 2000-08-09
Release status REL
Model PDB code 1FIR
Processing site RCSB