PDB Chemical Component ZZY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for ZZY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O11 |
C10 |
1.186 |
1.215 |
| C10 |
N12 |
1.340 |
1.348 |
| C10 |
C5 |
1.449 |
1.476 |
| C5 |
C3 |
1.363 |
1.399 |
| C5 |
C6 |
1.372 |
1.400 |
| C3 |
C1 |
1.381 |
1.387 |
| C1 |
C2 |
1.356 |
1.409 |
| C1 |
N9 |
1.297 |
1.379 |
| C6 |
N4 |
1.364 |
1.312 |
| N4 |
C2 |
1.327 |
1.333 |
| C2 |
C8 |
1.333 |
1.419 |
| C8 |
C7 |
1.350 |
1.345 |
| C7 |
N9 |
1.320 |
1.365 |
| N9 |
S13 |
1.643 |
1.656 |
| S13 |
O16 |
1.260 |
1.421 |
| S13 |
O15 |
1.312 |
1.420 |
| S13 |
C14 |
1.754 |
1.762 |
| C14 |
C21 |
1.442 |
1.383 |
| C14 |
C20 |
1.381 |
1.383 |
| C21 |
N22 |
1.462 |
1.480 |
| C21 |
C19 |
1.391 |
1.383 |
| N22 |
O23 |
1.247 |
1.218 |
| N22 |
O24 |
1.183 |
1.218 |
| C20 |
C18 |
1.373 |
1.382 |
| C18 |
C17 |
1.368 |
1.382 |
| C17 |
C19 |
1.346 |
1.383 |
| N12 |
H121 |
1.000 |
0.969 |
| N12 |
H122 |
1.000 |
0.970 |
| C3 |
H3 |
1.080 |
1.080 |
| C6 |
H6 |
1.080 |
1.080 |
| C8 |
H8 |
1.080 |
1.080 |
| C7 |
H7 |
1.080 |
1.080 |
| C20 |
H20 |
1.080 |
1.079 |
| C19 |
H19 |
1.080 |
1.080 |
| C18 |
H18 |
1.081 |
1.081 |
| C17 |
H17 |
1.080 |
1.080 |
Bond Angles for ZZY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O11 |
C10 |
N12 |
122.2 |
120.0 |
| O11 |
C10 |
C5 |
125.6 |
120.0 |
| N12 |
C10 |
C5 |
112.2 |
120.0 |
| C10 |
N12 |
H121 |
113.2 |
120.0 |
| C10 |
N12 |
H122 |
123.4 |
120.0 |
| C10 |
C5 |
C3 |
117.8 |
120.3 |
| C10 |
C5 |
C6 |
123.4 |
120.4 |
| C3 |
C5 |
C6 |
118.8 |
119.3 |
| C5 |
C3 |
C1 |
119.8 |
118.1 |
| C5 |
C3 |
H3 |
120.1 |
120.9 |
| C5 |
C6 |
N4 |
120.5 |
121.1 |
| C5 |
C6 |
H6 |
119.8 |
119.4 |
| C3 |
C1 |
C2 |
119.9 |
119.3 |
| C3 |
C1 |
N9 |
130.0 |
133.5 |
| C1 |
C3 |
H3 |
120.1 |
120.9 |
| C2 |
C1 |
N9 |
110.1 |
107.1 |
| C1 |
C2 |
N4 |
120.6 |
120.5 |
| C1 |
C2 |
C8 |
109.2 |
106.4 |
| C1 |
N9 |
C7 |
104.3 |
108.8 |
| C1 |
N9 |
S13 |
130.2 |
125.6 |
| C6 |
N4 |
C2 |
120.5 |
121.7 |
| N4 |
C6 |
H6 |
119.8 |
119.4 |
| N4 |
C2 |
C8 |
130.2 |
133.1 |
| C2 |
C8 |
C7 |
102.3 |
107.9 |
| C2 |
C8 |
H8 |
128.9 |
126.1 |
| C8 |
C7 |
N9 |
114.1 |
109.7 |
| C7 |
C8 |
H8 |
128.9 |
126.0 |
| C8 |
C7 |
H7 |
123.0 |
125.1 |
| C7 |
N9 |
S13 |
125.5 |
125.6 |
| N9 |
C7 |
H7 |
123.0 |
125.2 |
| N9 |
S13 |
O16 |
115.5 |
106.4 |
| N9 |
S13 |
O15 |
110.8 |
106.4 |
| N9 |
S13 |
C14 |
112.8 |
107.2 |
| O16 |
S13 |
O15 |
105.4 |
123.2 |
| O16 |
S13 |
C14 |
105.4 |
106.4 |
| O15 |
S13 |
C14 |
106.3 |
106.4 |
| S13 |
C14 |
C21 |
128.5 |
120.0 |
| S13 |
C14 |
C20 |
114.8 |
120.0 |
| C21 |
C14 |
C20 |
116.7 |
120.0 |
| C14 |
C21 |
N22 |
127.3 |
120.0 |
| C14 |
C21 |
C19 |
119.9 |
120.0 |
| C14 |
C20 |
C18 |
121.4 |
120.0 |
| C14 |
C20 |
H20 |
119.3 |
120.0 |
| N22 |
C21 |
C19 |
112.8 |
120.0 |
| C21 |
N22 |
O23 |
120.6 |
120.0 |
| C21 |
N22 |
O24 |
124.9 |
120.0 |
| C21 |
C19 |
C17 |
120.0 |
120.0 |
| C21 |
C19 |
H19 |
120.0 |
120.0 |
| O23 |
N22 |
O24 |
114.4 |
119.9 |
| C20 |
C18 |
C17 |
120.7 |
120.1 |
| C18 |
C20 |
H20 |
119.3 |
120.1 |
| C20 |
C18 |
H18 |
119.6 |
120.0 |
| C18 |
C17 |
C19 |
120.7 |
120.0 |
| C17 |
C18 |
H18 |
119.7 |
119.9 |
| C18 |
C17 |
H17 |
119.7 |
120.1 |
| C17 |
C19 |
H19 |
120.0 |
120.0 |
| C19 |
C17 |
H17 |
119.7 |
120.0 |
| H121 |
N12 |
H122 |
123.4 |
120.0 |
Torsion Angles for ZZY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N12 |
C10 |
O11 |
C5 |
180.3 |
180.3 |
| O11 |
C10 |
N12 |
H121 |
180.0 |
0.1 |
| O11 |
C10 |
N12 |
H122 |
360.0 |
180.0 |
| O11 |
C10 |
C5 |
C3 |
180.1 |
360.0 |
| O11 |
C10 |
C5 |
C6 |
0.8 |
179.7 |
| O11 |
C10 |
N12 |
C5 |
179.7 |
179.7 |
| N12 |
C10 |
C5 |
C3 |
359.8 |
179.7 |
| N12 |
C10 |
C5 |
C6 |
180.5 |
359.4 |
| H121 |
N12 |
C10 |
H122 |
180.0 |
180.1 |
| O11 |
C10 |
C5 |
N12 |
180.3 |
180.3 |
| C5 |
C10 |
N12 |
H121 |
0.3 |
180.3 |
| C5 |
C10 |
N12 |
H122 |
180.3 |
0.2 |
| C3 |
C5 |
C10 |
C6 |
179.3 |
180.3 |
| C10 |
C5 |
C3 |
C1 |
181.0 |
179.9 |
| C10 |
C5 |
C3 |
H3 |
0.9 |
360.0 |
| C10 |
C5 |
C6 |
N4 |
179.0 |
180.0 |
| C10 |
C5 |
C6 |
H6 |
359.0 |
0.0 |
| C10 |
C5 |
C3 |
C6 |
180.6 |
179.7 |
| C3 |
C5 |
C6 |
N4 |
359.7 |
359.7 |
| C3 |
C5 |
C6 |
H6 |
179.7 |
179.7 |
| C5 |
C3 |
C1 |
C2 |
359.8 |
0.0 |
| C5 |
C3 |
C1 |
N9 |
180.2 |
179.9 |
| C1 |
C3 |
C5 |
H3 |
180.0 |
180.0 |
| C10 |
C5 |
C6 |
C3 |
179.3 |
180.3 |
| C6 |
C5 |
C3 |
C1 |
0.3 |
0.2 |
| C6 |
C5 |
C3 |
H3 |
180.3 |
180.3 |
| C5 |
C6 |
N4 |
C2 |
0.2 |
360.0 |
| N4 |
C6 |
C5 |
H6 |
180.0 |
180.0 |
| C1 |
C3 |
C5 |
C6 |
0.3 |
0.2 |
| C5 |
C3 |
C1 |
H3 |
180.0 |
180.0 |
| C2 |
C1 |
C3 |
N9 |
179.5 |
180.1 |
| C3 |
C1 |
C2 |
N4 |
0.1 |
359.7 |
| C3 |
C1 |
C2 |
C8 |
181.0 |
180.0 |
| C3 |
C1 |
N9 |
C7 |
179.8 |
180.0 |
| C3 |
C1 |
N9 |
S13 |
0.2 |
0.1 |
| C3 |
C1 |
C2 |
N9 |
180.4 |
179.9 |
| C2 |
C1 |
C3 |
H3 |
179.8 |
180.0 |
| C2 |
C1 |
N9 |
C7 |
0.2 |
359.9 |
| C2 |
C1 |
N9 |
S13 |
180.6 |
180.0 |
| C6 |
N4 |
C2 |
C1 |
359.9 |
0.3 |
| N4 |
C2 |
C1 |
C8 |
179.1 |
179.7 |
| C1 |
C2 |
C8 |
C7 |
358.8 |
0.0 |
| C1 |
C2 |
C8 |
H8 |
178.8 |
179.9 |
| C3 |
C1 |
N9 |
C2 |
179.6 |
180.1 |
| N9 |
C1 |
C3 |
H3 |
0.2 |
359.9 |
| N9 |
C1 |
C2 |
N4 |
179.8 |
179.8 |
| N9 |
C1 |
C2 |
C8 |
0.7 |
0.0 |
| C8 |
C7 |
N9 |
C1 |
358.9 |
0.1 |
| C7 |
N9 |
C1 |
S13 |
179.6 |
179.9 |
| C1 |
N9 |
C7 |
H7 |
179.0 |
180.0 |
| C1 |
N9 |
S13 |
O16 |
217.3 |
48.5 |
| C1 |
N9 |
S13 |
O15 |
337.1 |
181.4 |
| C1 |
N9 |
S13 |
C14 |
96.1 |
294.9 |
| C5 |
C6 |
N4 |
H6 |
180.0 |
180.0 |
| C1 |
C2 |
N4 |
C6 |
359.9 |
0.3 |
| C6 |
N4 |
C2 |
C8 |
178.8 |
180.0 |
| N4 |
C2 |
C1 |
N9 |
179.8 |
179.8 |
| C1 |
C2 |
N4 |
C8 |
181.1 |
180.4 |
| C2 |
N4 |
C6 |
H6 |
180.3 |
180.0 |
| N4 |
C2 |
C8 |
C7 |
179.8 |
180.4 |
| N4 |
C2 |
C8 |
H8 |
359.8 |
0.3 |
| C8 |
C2 |
C1 |
N9 |
0.7 |
0.0 |
| C1 |
C2 |
C8 |
N4 |
179.0 |
179.7 |
| C2 |
C8 |
C7 |
N9 |
1.4 |
359.9 |
| C7 |
C8 |
C2 |
H8 |
180.0 |
180.1 |
| C2 |
C8 |
C7 |
H7 |
181.4 |
180.0 |
| C1 |
N9 |
C7 |
C8 |
358.9 |
0.1 |
| C2 |
C8 |
C7 |
H8 |
180.0 |
179.9 |
| C8 |
C7 |
N9 |
S13 |
178.6 |
180.0 |
| N9 |
C7 |
C8 |
H7 |
180.0 |
179.9 |
| C1 |
N9 |
C7 |
S13 |
180.3 |
180.1 |
| N9 |
C7 |
C8 |
H8 |
181.4 |
180.0 |
| C8 |
C7 |
N9 |
H7 |
180.0 |
180.1 |
| C7 |
N9 |
S13 |
O16 |
37.8 |
228.6 |
| C7 |
N9 |
S13 |
O15 |
157.5 |
1.5 |
| C7 |
N9 |
S13 |
C14 |
276.5 |
115.1 |
| C1 |
N9 |
S13 |
C7 |
179.6 |
179.9 |
| S13 |
N9 |
C7 |
H7 |
358.6 |
359.9 |
| O16 |
S13 |
N9 |
O15 |
240.3 |
227.1 |
| O16 |
S13 |
N9 |
C14 |
121.3 |
113.5 |
| O15 |
S13 |
N9 |
C14 |
241.0 |
246.5 |
| N9 |
S13 |
C14 |
C21 |
82.4 |
293.9 |
| N9 |
S13 |
C14 |
C20 |
262.5 |
113.6 |
| N9 |
S13 |
O16 |
O15 |
122.7 |
123.0 |
| N9 |
S13 |
O16 |
C14 |
234.8 |
245.9 |
| O15 |
S13 |
O16 |
C14 |
112.2 |
122.9 |
| O16 |
S13 |
C14 |
C21 |
315.6 |
180.4 |
| O16 |
S13 |
C14 |
C20 |
135.7 |
0.1 |
| N9 |
S13 |
O15 |
O16 |
234.4 |
237.0 |
| N9 |
S13 |
O15 |
C14 |
122.8 |
114.1 |
| O16 |
S13 |
O15 |
C14 |
248.4 |
237.1 |
| O15 |
S13 |
C14 |
C21 |
204.0 |
47.5 |
| O15 |
S13 |
C14 |
C20 |
24.1 |
227.2 |
| N9 |
S13 |
C14 |
O16 |
126.8 |
113.5 |
| N9 |
S13 |
C14 |
O15 |
238.4 |
246.4 |
| O16 |
S13 |
C14 |
O15 |
111.6 |
132.9 |
| C21 |
C14 |
S13 |
C20 |
179.9 |
180.3 |
| S13 |
C14 |
C21 |
N22 |
357.9 |
360.0 |
| S13 |
C14 |
C21 |
C19 |
177.1 |
180.0 |
| S13 |
C14 |
C20 |
C18 |
178.8 |
180.0 |
| S13 |
C14 |
C20 |
H20 |
358.8 |
360.0 |
| S13 |
C14 |
C21 |
C20 |
180.1 |
179.7 |
| C21 |
C14 |
C20 |
C18 |
358.9 |
359.7 |
| C21 |
C14 |
C20 |
H20 |
178.9 |
179.7 |
| N22 |
C21 |
C14 |
C19 |
180.8 |
180.0 |
| C14 |
C21 |
N22 |
O23 |
319.7 |
186.6 |
| C14 |
C21 |
N22 |
O24 |
139.2 |
6.6 |
| C14 |
C21 |
C19 |
C17 |
8.2 |
0.1 |
| C14 |
C21 |
C19 |
H19 |
188.2 |
180.0 |
| S13 |
C14 |
C20 |
C21 |
179.9 |
180.3 |
| C20 |
C14 |
C21 |
N22 |
177.8 |
180.3 |
| C20 |
C14 |
C21 |
C19 |
357.0 |
0.3 |
| C14 |
C20 |
C18 |
C17 |
0.3 |
359.9 |
| C18 |
C20 |
C14 |
H20 |
180.0 |
180.1 |
| C14 |
C20 |
C18 |
H18 |
180.2 |
180.0 |
| N22 |
C21 |
C14 |
C20 |
177.8 |
180.3 |
| C14 |
C21 |
N22 |
C19 |
179.2 |
180.0 |
| N22 |
C21 |
C19 |
C17 |
187.5 |
180.1 |
| N22 |
C21 |
C19 |
H19 |
7.5 |
0.0 |
| O23 |
N22 |
C21 |
O24 |
180.5 |
180.0 |
| C19 |
C21 |
C14 |
C20 |
357.0 |
0.3 |
| C14 |
C21 |
C19 |
N22 |
180.7 |
180.0 |
| C19 |
C21 |
N22 |
O23 |
140.5 |
6.6 |
| C19 |
C21 |
N22 |
O24 |
320.0 |
186.6 |
| C18 |
C17 |
C19 |
C21 |
350.8 |
359.6 |
| C17 |
C19 |
C21 |
H19 |
180.0 |
180.1 |
| C21 |
C19 |
C17 |
H17 |
170.8 |
180.0 |
| O23 |
N22 |
C21 |
C19 |
140.5 |
6.6 |
| C21 |
N22 |
O23 |
O24 |
179.6 |
180.0 |
| O24 |
N22 |
C21 |
C19 |
320.0 |
186.6 |
| C21 |
N22 |
O24 |
O23 |
180.5 |
180.0 |
| C14 |
C20 |
C18 |
H20 |
180.0 |
179.9 |
| C20 |
C18 |
C17 |
C19 |
5.0 |
0.4 |
| C17 |
C18 |
C20 |
H18 |
180.0 |
179.9 |
| C20 |
C18 |
C17 |
H17 |
185.0 |
180.0 |
| C21 |
C19 |
C17 |
C18 |
350.8 |
359.6 |
| C17 |
C18 |
C20 |
H20 |
180.3 |
180.0 |
| C20 |
C18 |
C17 |
H18 |
180.0 |
180.1 |
| C18 |
C17 |
C19 |
H19 |
170.8 |
179.7 |
| C19 |
C17 |
C18 |
H17 |
180.0 |
180.5 |
| C21 |
C19 |
C17 |
H19 |
180.0 |
179.9 |
| C19 |
C17 |
C18 |
H18 |
185.1 |
180.3 |
| C18 |
C17 |
C19 |
H17 |
180.0 |
179.5 |
| H121 |
N12 |
C10 |
C5 |
0.3 |
180.3 |
| C10 |
N12 |
H121 |
H122 |
180.0 |
179.9 |
| H122 |
N12 |
C10 |
C5 |
180.3 |
0.2 |
| C10 |
N12 |
H122 |
H121 |
180.0 |
180.1 |
| H3 |
C3 |
C5 |
C6 |
180.3 |
180.3 |
| C5 |
C3 |
H3 |
C1 |
180.0 |
180.0 |
| H3 |
C3 |
C1 |
C2 |
179.8 |
180.0 |
| H3 |
C3 |
C1 |
N9 |
0.2 |
359.9 |
| C5 |
C6 |
H6 |
N4 |
180.0 |
180.0 |
| H6 |
C6 |
N4 |
C2 |
180.3 |
180.0 |
| C2 |
C8 |
H8 |
C7 |
180.0 |
180.1 |
| H8 |
C8 |
C7 |
N9 |
181.4 |
180.0 |
| H8 |
C8 |
C7 |
H7 |
1.4 |
0.1 |
| C8 |
C7 |
H7 |
N9 |
180.0 |
179.9 |
| H7 |
C7 |
C8 |
H8 |
1.4 |
0.1 |
| H7 |
C7 |
N9 |
S13 |
358.6 |
359.9 |
| C14 |
C20 |
H20 |
C18 |
180.0 |
180.1 |
| H20 |
C20 |
C18 |
C17 |
180.3 |
180.0 |
| H20 |
C20 |
C18 |
H18 |
0.3 |
0.1 |
| C21 |
C19 |
H19 |
C17 |
180.0 |
180.1 |
| H19 |
C19 |
C17 |
H17 |
350.8 |
0.1 |
| C20 |
C18 |
H18 |
C17 |
180.0 |
179.9 |
| H18 |
C18 |
C20 |
H20 |
0.3 |
0.1 |
| H18 |
C18 |
C17 |
C19 |
185.1 |
180.3 |
| H18 |
C18 |
C17 |
H17 |
5.0 |
359.9 |
| C18 |
C17 |
H17 |
C19 |
180.0 |
180.5 |
| H17 |
C17 |
C18 |
H18 |
5.0 |
359.9 |
| H17 |
C17 |
C19 |
H19 |
350.8 |
0.1 |