Atom Nomenclature for ZZL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZZL

Atom Name (V3) Atom Name (V2)
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
C28 C28
O01 O01
C02 C02
O03 O03
C04 C04
C05 C05
C06 C06
C07 C07
N08 N08
C09 C09
N10 N10
C11 C11
C12 C12
N14 N14
C16 C16
F18 F18
C19 C19
F23 F23
C25 C25
CL1 CL1
C29 C29
C30 C30
C31 C31
N32 N32
C33 C33
C34 C34
H131 H131
H132 H132
H19 H19
H20 H20
H21 H21
H25 H25
H28 H28
H29 H29
H03 H03
H05 H05
H34 H34
H06 H06
H08 H08
H33 H33
H11 H11