PDB Chemical Component ZZD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZZD

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N CA 1.460 1.470
CA CB 1.542 1.530
CA C 1.551 1.507
CB SG 1.850 1.814
C O 1.249 1.208
C OXT 1.252 1.343
SG CAZ 1.852 1.813
CAM CAG 1.402 1.382
CAM CAV 1.401 1.383
CAG CAD 1.396 1.383
CAD CAH 1.399 1.383
CAH CAN 1.396 1.382
CAN CAV 1.395 1.383
CAV CAZ 1.557 1.507
CAZ CAX 1.517 1.507
CAZ CAW 1.541 1.507
CAX CAQ 1.388 1.382
CAX CAR 1.397 1.381
CAQ CAK 1.393 1.383
CAK CAF 1.400 1.382
CAF CAL 1.396 1.382
CAL CAR 1.392 1.383
CAW CAO 1.388 1.382
CAW CAP 1.390 1.382
CAO CAI 1.390 1.382
CAI CAE 1.390 1.383
CAE CAJ 1.389 1.383
CAJ CAP 1.390 1.382
N HN1 1.000 1.008
N HN2 1.000 1.009
CA HA 1.100 1.090
CB HB1C 1.100 1.090
CB HB2C 1.100 1.090
OXT HXT 0.950 0.967
CAM HAM 1.080 1.080
CAG HAG 1.080 1.080
CAD HAD 1.080 1.079
CAH HAH 1.080 1.080
CAN HAN 1.080 1.080
CAQ HAQ 1.080 1.081
CAR HAR 1.080 1.080
CAK HAK 1.080 1.079
CAF HAF 1.080 1.080
CAL HAL 1.080 1.080
CAO HAO 1.080 1.080
CAP HAP 1.080 1.081
CAI HAI 1.080 1.080
CAE HAE 1.080 1.079
CAJ HAJ 1.080 1.080

Bond Angles for ZZD

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N CA CB 108.1 109.4
N CA C 108.2 109.5
CA N HN1 109.5 111.0
CA N HN2 109.5 111.0
N CA HA 111.9 109.5
CB CA C 111.4 109.4
CA CB SG 113.7 109.5
CB CA HA 108.7 109.5
CA CB HB1C 108.0 109.5
CA CB HB2C 107.1 109.4
CA C O 117.6 120.0
CA C OXT 117.6 120.0
C CA HA 108.6 109.5
CB SG CAZ 105.9 103.0
SG CB HB1C 108.1 109.5
SG CB HB2C 107.1 109.4
O C OXT 124.8 120.0
C OXT HXT 109.5 117.0
SG CAZ CAV 113.3 109.5
SG CAZ CAX 100.8 109.5
SG CAZ CAW 108.7 109.5
CAG CAM CAV 120.6 120.0
CAM CAG CAD 120.0 120.0
CAG CAM HAM 119.7 120.0
CAM CAG HAG 120.0 120.0
CAM CAV CAN 118.4 120.0
CAM CAV CAZ 121.5 120.0
CAV CAM HAM 119.7 120.0
CAG CAD CAH 119.8 120.0
CAD CAG HAG 120.0 120.0
CAG CAD HAD 120.1 120.0
CAD CAH CAN 119.5 120.0
CAH CAD HAD 120.1 120.0
CAD CAH HAH 120.2 120.0
CAH CAN CAV 121.5 120.0
CAN CAH HAH 120.3 120.0
CAH CAN HAN 119.2 120.0
CAN CAV CAZ 120.0 120.0
CAV CAN HAN 119.2 120.0
CAV CAZ CAX 113.9 109.5
CAV CAZ CAW 104.7 109.5
CAX CAZ CAW 115.6 109.4
CAZ CAX CAQ 118.0 120.0
CAZ CAX CAR 120.8 120.0
CAZ CAW CAO 119.6 120.0
CAZ CAW CAP 121.4 120.0
CAQ CAX CAR 120.3 120.0
CAX CAQ CAK 119.5 120.0
CAX CAQ HAQ 120.2 120.0
CAX CAR CAL 119.6 120.0
CAX CAR HAR 120.2 120.0
CAQ CAK CAF 120.6 120.0
CAK CAQ HAQ 120.3 120.0
CAQ CAK HAK 119.7 120.0
CAK CAF CAL 119.0 120.0
CAF CAK HAK 119.7 120.0
CAK CAF HAF 120.5 120.0
CAF CAL CAR 120.6 120.0
CAL CAF HAF 120.5 120.0
CAF CAL HAL 119.7 120.0
CAL CAR HAR 120.2 119.9
CAR CAL HAL 119.7 120.0
CAO CAW CAP 118.9 120.0
CAW CAO CAI 121.0 120.0
CAW CAO HAO 119.5 120.0
CAW CAP CAJ 120.5 120.0
CAW CAP HAP 119.7 120.0
CAO CAI CAE 119.7 120.0
CAI CAO HAO 119.5 120.0
CAO CAI HAI 120.1 120.0
CAI CAE CAJ 119.7 120.0
CAE CAI HAI 120.2 120.0
CAI CAE HAE 120.1 120.0
CAE CAJ CAP 120.1 120.0
CAJ CAE HAE 120.1 120.0
CAE CAJ HAJ 120.0 120.0
CAJ CAP HAP 119.7 120.0
CAP CAJ HAJ 119.9 120.0
HN1 N HN2 109.5 111.0
HB1C CB HB2C 112.9 109.5

Torsion Angles for ZZD

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
CB CA N C 239.2 240.1
N CA CB SG 294.7 300.0
CB CA N HA 119.6 120.0
N CA CB HB1C 54.7 60.0
N CA CB HB2C 176.5 180.0
N CA C O 177.6 340.1
N CA C OXT 356.9 160.0
C CA N HA 240.4 239.9
HN1 N CA HN2 240.0 236.0
N CA CB C 118.8 119.9
CB CA N HN1 165.1 176.1
CB CA N HN2 285.1 300.0
N CA CB HA 238.4 240.0
CB CA C O 296.3 100.0
CB CA C OXT 115.6 279.9
C CA CB HA 119.6 120.1
CA CB SG CAZ 195.2 178.2
SG CB CA HB1C 240.0 240.0
SG CB CA HB2C 118.1 120.0
HB1C CB CA HB2C 238.1 240.0
N CA C CB 241.3 240.1
C CA N HN1 285.9 296.0
C CA N HN2 45.9 60.0
N CA C HA 121.6 120.0
C CA CB SG 175.9 180.0
CB CA C HA 240.3 240.0
C CA CB HB1C 295.9 300.0
C CA CB HB2C 57.8 60.1
O C CA OXT 180.7 180.1
CA C OXT HXT 180.8 180.0
SG CB CA C 175.9 180.0
SG CB CA HA 56.3 60.0
CA CB SG HB1C 120.0 120.1
CA CB SG HB2C 241.9 240.0
CB SG CAZ CAV 182.6 306.0
CB SG CAZ CAX 304.7 66.0
CB SG CAZ CAW 66.6 186.0
HB1C CB SG HB2C 121.9 120.0
CA C O OXT 179.2 179.9
O C CA HA 56.0 220.0
O C OXT HXT 0.0 359.9
CA C OXT O 180.8 180.1
OXT C CA HA 235.2 39.9
CAZ SG CB HB1C 75.2 58.1
CAZ SG CB HB2C 313.3 298.2
CAM CAV CAZ SG 161.5 295.6
CAN CAV CAZ SG 337.5 115.6
CAV CAZ SG CAX 237.9 240.0
CAV CAZ SG CAW 116.0 120.0
CAX CAZ SG CAW 238.1 240.0
SG CAZ CAX CAQ 289.5 359.4
SG CAZ CAX CAR 98.6 179.2
SG CAZ CAW CAO 8.6 329.9
SG CAZ CAW CAP 184.9 149.6
CAG CAM CAV CAN 2.1 360.0
CAG CAM CAV CAZ 178.2 180.0
CAV CAM CAG HAM 180.0 180.3
CAM CAG CAD CAH 2.4 0.0
CAD CAG CAM HAG 180.0 179.9
CAM CAG CAD HAD 182.4 180.0
SG CAZ CAV CAM 161.5 295.6
CAV CAM CAG CAD 357.1 360.0
CAG CAM CAV HAM 180.0 179.7
CAV CAM CAG HAG 177.1 180.0
CAH CAN CAV CAM 359.1 0.1
CAN CAV CAM CAZ 184.0 180.0
CAM CAV CAN HAN 179.1 180.0
CAM CAV CAZ CAX 47.0 175.6
CAM CAV CAZ CAW 279.9 55.6
CAD CAG CAM CAV 357.1 360.0
CAD CAG CAM HAM 177.1 179.7
CAM CAG CAD HAG 180.0 180.1
CAG CAD CAH CAN 358.8 0.0
CAH CAD CAG HAD 180.0 180.1
CAG CAD CAH HAH 178.8 179.9
CAH CAD CAG HAG 182.4 180.0
CAG CAD CAH HAD 180.0 179.9
CAD CAH CAN CAV 0.5 359.9
CAN CAH CAD HAH 180.0 180.1
CAD CAH CAN HAN 180.4 180.0
CAM CAV CAN CAH 359.1 0.1
CAN CAH CAD HAD 178.8 180.1
CAD CAH CAN HAH 180.0 179.9
CAH CAN CAV CAZ 183.0 180.0
CAV CAN CAH HAN 180.0 180.0
SG CAZ CAV CAN 337.5 115.6
CAM CAV CAN CAZ 176.1 180.0
CAN CAV CAM HAM 182.1 180.2
CAV CAN CAH HAH 180.5 180.1
CAH CAN CAV HAN 180.0 180.0
CAN CAV CAZ CAX 223.0 355.6
CAN CAV CAZ CAW 95.8 235.7
SG CAZ CAV CAX 114.5 120.0
SG CAZ CAV CAW 241.7 240.0
CAM CAV CAZ CAN 184.0 180.0
CAZ CAV CAM HAM 358.2 0.3
CAZ CAV CAN HAN 3.0 0.0
CAX CAZ CAV CAW 127.2 119.9
CAV CAZ CAX CAQ 51.2 119.5
CAV CAZ CAX CAR 220.3 299.2
CAV CAZ CAW CAO 247.3 209.9
CAV CAZ CAW CAP 63.5 29.6
SG CAZ CAX CAV 238.3 240.0
SG CAZ CAX CAW 117.0 120.0
CAV CAZ CAX CAW 238.7 240.0
CAX CAZ CAW CAO 121.1 89.9
CAX CAZ CAW CAP 297.3 269.6
CAQ CAX CAZ CAR 190.9 180.2
CAZ CAX CAQ CAK 176.7 180.0
CAZ CAX CAQ HAQ 356.7 0.1
CAZ CAX CAR CAL 186.2 179.8
CAZ CAX CAR HAR 6.2 360.0
SG CAZ CAW CAV 121.4 120.0
SG CAZ CAW CAX 247.5 240.0
CAV CAZ CAW CAX 126.1 120.0
CAW CAZ CAX CAQ 172.5 239.4
CAW CAZ CAX CAR 341.6 59.2
CAO CAW CAZ CAP 183.8 180.3
CAZ CAW CAO CAI 178.5 180.0
CAZ CAW CAO HAO 358.5 360.0
CAZ CAW CAP CAJ 183.0 179.8
CAZ CAW CAP HAP 3.0 0.1
CAQ CAX CAZ CAW 172.5 239.4
CAZ CAX CAQ CAR 169.2 179.8
CAQ CAX CAR CAL 355.1 359.6
CAQ CAX CAR HAR 175.1 179.8
CAX CAQ CAK CAF 353.2 360.0
CAK CAQ CAX HAQ 180.0 180.0
CAX CAQ CAK HAK 173.2 180.0
CAR CAX CAZ CAW 341.6 59.2
CAZ CAX CAR CAQ 191.1 180.2
CAR CAX CAQ CAK 7.5 0.2
CAR CAX CAQ HAQ 187.5 180.3
CAF CAL CAR CAX 1.6 0.4
CAL CAR CAX HAR 180.0 179.8
CAX CAR CAL HAL 181.6 180.2
CAK CAQ CAX CAR 7.5 0.2
CAX CAQ CAK HAQ 180.0 180.0
CAQ CAK CAF CAL 3.5 0.0
CAF CAK CAQ HAK 180.0 180.0
CAQ CAK CAF HAF 183.5 180.0
CAF CAK CAQ HAQ 173.2 179.9
CAQ CAK CAF HAK 180.0 180.0
CAK CAF CAL CAR 359.1 359.8
CAL CAF CAK HAF 180.0 180.0
CAK CAF CAL HAL 179.1 180.0
CAX CAR CAL CAF 1.6 0.4
CAL CAF CAK HAK 183.5 180.0
CAK CAF CAL HAF 180.0 180.0
CAF CAL CAR HAR 181.6 180.2
CAR CAL CAF HAL 180.0 179.8
CAX CAR CAL HAR 180.0 180.2
CAR CAL CAF HAF 179.1 179.8
CAF CAL CAR HAL 180.0 180.2
CAZ CAW CAO CAP 176.3 179.7
CAO CAW CAP CAJ 359.3 359.5
CAO CAW CAP HAP 179.3 179.7
CAW CAO CAI CAE 358.7 360.0
CAI CAO CAW HAO 180.0 180.0
CAW CAO CAI HAI 178.7 180.0
CAZ CAW CAP CAO 183.7 180.3
CAP CAW CAO CAI 2.1 0.3
CAP CAW CAO HAO 182.1 180.3
CAE CAJ CAP CAW 358.5 0.5
CAJ CAP CAW HAP 180.0 179.7
CAW CAP CAJ HAJ 178.5 180.2
CAI CAO CAW CAP 2.1 0.3
CAW CAO CAI HAO 180.0 180.0
CAO CAI CAE CAJ 359.0 360.0
CAE CAI CAO HAI 180.0 180.0
CAO CAI CAE HAE 179.0 180.0
CAE CAI CAO HAO 178.7 180.0
CAO CAI CAE HAI 180.0 180.0
CAI CAE CAJ CAP 2.4 359.8
CAJ CAE CAI HAE 180.0 180.0
CAI CAE CAJ HAJ 182.4 180.0
CAW CAP CAJ CAE 358.5 0.5
CAJ CAE CAI HAI 179.0 180.0
CAI CAE CAJ HAE 180.0 180.0
CAE CAJ CAP HAP 178.4 180.2
CAP CAJ CAE HAJ 180.0 179.8
CAW CAP CAJ HAP 180.0 180.3
CAP CAJ CAE HAE 182.4 179.8
CAE CAJ CAP HAJ 180.0 180.2
HN1 N CA CB 165.1 176.1
HN1 N CA C 285.9 296.0
CA N HN1 HN2 120.0 123.9
HN1 N CA HA 45.5 56.1
HN2 N CA CB 285.1 300.0
HN2 N CA C 45.9 60.0
CA N HN2 HN1 240.0 236.1
HN2 N CA HA 165.5 180.1
N CA HA CB 119.3 120.0
N CA HA C 240.6 240.0
HA CA N HN1 45.5 56.1
HA CA N HN2 165.5 180.1
CB CA HA C 121.4 120.0
HA CA CB SG 56.3 60.0
HA CA CB HB1C 176.3 180.0
HA CA CB HB2C 298.2 300.0
HA CA C O 56.0 220.0
HA CA C OXT 235.2 39.9
HB1C CB CA C 295.9 300.0
CA CB HB1C SG 236.5 240.0
HB1C CB CA HA 176.3 180.0
CA CB HB1C HB2C 118.2 120.0
HB1C CB SG CAZ 75.2 58.1
SG CB HB1C HB2C 241.7 240.0
HB2C CB CA C 57.8 60.1
CA CB HB2C SG 122.4 120.0
HB2C CB CA HA 298.2 300.0
CA CB HB2C HB1C 241.2 240.0
HB2C CB SG CAZ 313.3 298.2
SG CB HB2C HB1C 118.8 120.0
CAG CAM HAM CAV 180.0 180.3
HAM CAM CAG CAD 177.1 179.7
HAM CAM CAG HAG 357.1 359.8
HAM CAM CAV CAN 182.1 180.2
HAM CAM CAV CAZ 358.2 0.3
HAG CAG CAM CAV 177.1 180.0
CAM CAG HAG CAD 180.0 179.9
HAG CAG CAM HAM 357.1 359.8
HAG CAG CAD CAH 182.4 180.0
HAG CAG CAD HAD 2.4 359.9
CAG CAD HAD CAH 180.0 180.1
HAD CAD CAG HAG 2.4 359.9
HAD CAD CAH CAN 178.8 180.1
HAD CAD CAH HAH 358.8 360.0
CAD CAH HAH CAN 180.0 180.1
HAH CAH CAD HAD 358.8 360.0
HAH CAH CAN CAV 180.5 180.1
HAH CAH CAN HAN 0.4 0.1
CAH CAN HAN CAV 180.0 180.0
HAN CAN CAH HAH 0.4 0.1
HAN CAN CAV CAZ 3.0 0.0
HAQ CAQ CAX CAR 187.5 180.3
CAX CAQ HAQ CAK 180.0 180.0
HAQ CAQ CAK CAF 173.2 179.9
HAQ CAQ CAK HAK 353.2 360.0
CAX CAR HAR CAL 180.0 179.8
HAR CAR CAL HAL 1.6 0.0
CAQ CAK HAK CAF 180.0 180.0
HAK CAK CAQ HAQ 353.2 360.0
HAK CAK CAF CAL 183.5 180.0
HAK CAK CAF HAF 3.5 359.9
CAK CAF HAF CAL 180.0 180.0
HAF CAF CAK HAK 3.5 359.9
HAF CAF CAL CAR 179.1 179.8
HAF CAF CAL HAL 359.1 0.0
CAF CAL HAL CAR 180.0 179.8
HAL CAL CAF HAF 359.1 0.0
HAL CAL CAR HAR 1.6 0.0
HAO CAO CAW CAP 182.1 180.3
CAW CAO HAO CAI 180.0 180.0
HAO CAO CAI CAE 178.7 180.0
HAO CAO CAI HAI 358.7 360.0
CAW CAP HAP CAJ 180.0 179.7
HAP CAP CAJ HAJ 358.4 360.0
CAO CAI HAI CAE 180.0 180.0
HAI CAI CAO HAO 358.7 360.0
HAI CAI CAE CAJ 179.0 180.0
HAI CAI CAE HAE 359.0 360.0
CAI CAE HAE CAJ 180.0 180.0
HAE CAE CAI HAI 359.0 360.0
HAE CAE CAJ CAP 182.4 179.8
HAE CAE CAJ HAJ 2.4 0.0
CAE CAJ HAJ CAP 180.0 179.8
HAJ CAJ CAE HAE 2.4 0.0
HAJ CAJ CAP HAP 358.4 360.0