Atom Nomenclature for ZZ7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZZ7

Atom Name (V3) Atom Name (V2)
O1 O1
C2 C2
O2 O2
C12 C12
C6 C6
C1 C1
C16 C16
S1 S1
N3 N3
C13 C13
C14 C14
C15 C15
O4 O4
N1 N1
C3 C3
O3 O3
C4 C4
N2 N2
C5 C5
C7 C7
C8 C8
C9 C9
C10 C10
C11 C11
OXT OXT
H2 H2
H12 H12
H3 H3
H11C H11C
H12C H12C
H13C H13C
H161 H161
H162 H162
H163 H163
H13 H13
H14 H14
H1 H1
HXT HXT
H4 H4
H21N H21N
H22N H22N
H7 H7
H11 H11
H8 H8
H9 H9
H10 H10