Atom Nomenclature for ZY6

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZY6

Atom Name (V3) Atom Name (V2)
CAE CAE
CAC CAC
CAB CAB
CAD CAD
CAF CAF
CAQ CAQ
CAR CAR
CAG CAG
NAN NAN
CAU CAU
NAO NAO
NAM NAM
CAH CAH
CAT CAT
CAS CAS
NAV NAV
CAL CAL
CAK CAK
CAJ CAJ
OAP OAP
CAW CAW
CAI CAI
NAA NAA
HAE HAE
HAC HAC
HAB HAB
HAD HAD
HAF HAF
HAG HAG
HAO HAO
HAH HAH
HAL1 HAL1
HAL2 HAL2
HAK1 HAK1
HAK2 HAK2
HAW HAW
HAJ1 HAJ1
HAJ2 HAJ2
HAI1 HAI1
HAI2 HAI2
HAA1 HAA1
HAA2 HAA2