PDB Chemical Component ZY5

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZY5

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C7	C4	1.503	1.469
C7	C8	1.345	1.349
C4	C3	1.390	1.405
C4	C5	1.394	1.400
C3	O21	1.362	1.358
C3	C2	1.400	1.383
O21	C22	1.445	1.429
C2	C1	1.398	1.388
C5	C6	1.403	1.376
C6	C1	1.387	1.391
C1	O20	1.384	1.357
C8	C13	1.521	1.516
C8	C9	1.448	1.470
C13	C12	1.512	1.536
C12	C11	1.514	1.527
C11	N10	1.458	1.455
N10	C9	1.267	1.301
C9	C14	1.489	1.482
C14	C19	1.396	1.395
C14	C15	1.391	1.398
C19	N18	1.352	1.317
N18	C17	1.351	1.319
C17	C16	1.398	1.383
C16	C15	1.395	1.385
C7	H7	1.080	1.080
C5	H5	1.080	1.080
C2	H2	1.081	1.081
C22	H221	1.100	1.090
C22	H222	1.100	1.091
C22	H223	1.100	1.090
C6	H6	1.080	1.080
O20	H20	0.950	0.967
C13	H131	1.100	1.091
C13	H132	1.100	1.090
C12	H121	1.100	1.090
C12	H122	1.100	1.090
C11	H111	1.100	1.091
C11	H112	1.100	1.090
C19	H19	1.080	1.080
C15	H15	1.080	1.080
C17	H17	1.080	1.080
C16	H16	1.080	1.080

Bond Angles for ZY5

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C4	C7	C8	125.6	120.0
C7	C4	C3	118.1	120.2
C7	C4	C5	122.6	120.2
C4	C7	H7	117.2	120.0
C7	C8	C13	125.4	121.3
C7	C8	C9	119.2	121.3
C8	C7	H7	117.2	120.0
C3	C4	C5	119.2	119.7
C4	C3	O21	116.2	120.1
C4	C3	C2	121.0	119.8
C4	C5	C6	119.7	119.9
C4	C5	H5	120.2	120.0
O21	C3	C2	122.8	120.1
C3	O21	C22	124.8	117.0
C3	C2	C1	119.8	120.1
C3	C2	H2	120.1	120.0
O21	C22	H221	109.5	109.5
O21	C22	H222	109.5	109.4
O21	C22	H223	109.5	109.5
C2	C1	C6	119.0	120.3
C2	C1	O20	120.8	119.9
C1	C2	H2	120.1	120.0
C5	C6	C1	121.2	120.3
C6	C5	H5	120.2	120.1
C5	C6	H6	119.4	119.9
C6	C1	O20	120.1	119.8
C1	C6	H6	119.4	119.9
C1	O20	H20	109.5	114.0
C13	C8	C9	115.3	117.4
C8	C13	C12	108.3	106.9
C8	C13	H131	109.9	110.0
C8	C13	H132	110.1	110.0
C8	C9	N10	118.3	120.7
C8	C9	C14	124.9	119.6
C13	C12	C11	110.1	108.9
C12	C13	H131	109.9	110.0
C12	C13	H132	110.1	109.9
C13	C12	H121	109.3	109.5
C13	C12	H122	109.1	109.5
C12	C11	N10	106.4	111.6
C11	C12	H121	109.2	109.6
C11	C12	H122	109.1	109.6
C12	C11	H111	110.5	109.0
C12	C11	H112	111.2	109.1
C11	N10	C9	129.9	124.2
N10	C11	H111	110.5	109.1
N10	C11	H112	111.2	109.1
N10	C9	C14	116.6	119.6
C9	C14	C19	120.8	120.6
C9	C14	C15	119.4	120.5
C19	C14	C15	119.7	118.9
C14	C19	N18	122.2	120.6
C14	C19	H19	118.9	119.7
C14	C15	C16	117.4	118.3
C14	C15	H15	121.3	120.8
C19	N18	C17	119.1	121.8
N18	C19	H19	118.9	119.7
N18	C17	C16	120.8	121.1
N18	C17	H17	119.6	119.5
C17	C16	C15	120.8	119.3
C16	C17	H17	119.6	119.5
C17	C16	H16	119.6	120.4
C16	C15	H15	121.3	120.9
C15	C16	H16	119.6	120.3
H221	C22	H222	109.5	109.5
H221	C22	H223	109.4	109.5
H222	C22	H223	109.5	109.5
H131	C13	H132	108.5	110.0
H121	C12	H122	110.0	109.6
H111	C11	H112	107.1	108.9

Torsion Angles for ZY5

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C4	C7	C8	C13	359.1	352.7
C4	C7	C8	C9	177.2	172.4
C8	C7	C4	H7	180.0	180.3
C3	C4	C7	C5	182.7	180.3
C7	C4	C3	O21	358.4	360.0
C7	C4	C3	C2	179.3	180.0
C7	C4	C5	C6	180.2	180.0
C7	C4	C5	H5	0.2	359.9
C8	C7	C4	C3	154.7	142.1
C8	C7	C4	C5	332.0	321.8
C4	C7	C8	H7	180.0	179.7
C13	C8	C7	C9	181.8	180.3
C7	C8	C13	C12	213.2	220.3
C7	C8	C13	H131	333.3	339.7
C7	C8	C13	H132	92.8	100.9
C7	C8	C9	N10	186.8	168.9
C7	C8	C9	C14	2.0	349.2
C3	C4	C7	C8	154.7	142.1
C7	C4	C3	C5	177.4	179.7
C3	C4	C7	H7	334.7	321.8
C3	C4	C5	C6	357.4	359.8
C3	C4	C5	H5	177.4	179.7
O21	C3	C4	C2	179.1	180.0
C4	C3	O21	C22	186.7	180.0
C4	C3	C2	C1	358.5	0.0
C4	C3	C2	H2	178.5	180.0
C5	C4	C7	C8	332.0	321.8
C7	C4	C5	C3	182.8	180.3
C5	C4	C7	H7	152.0	141.5
C5	C4	C3	O21	181.0	180.3
C5	C4	C3	C2	2.0	0.3
C4	C5	C6	C1	2.9	359.9
C6	C5	C4	H5	180.0	180.1
C4	C5	C6	H6	182.9	179.9
O21	C3	C4	C5	181.0	180.3
C4	C3	O21	C2	180.9	180.0
O21	C3	C2	C1	179.5	180.0
O21	C3	C2	H2	359.5	360.0
C3	O21	C22	H221	19.0	60.0
C3	O21	C22	H222	139.0	180.0
C3	O21	C22	H223	259.0	300.0
C2	C3	C4	C5	2.0	0.3
C4	C3	C2	O21	179.0	180.0
C2	C3	O21	C22	5.7	0.0
C3	C2	C1	C6	1.7	359.6
C3	C2	C1	O20	179.6	180.0
C1	C2	C3	H2	180.0	180.1
C22	O21	C3	C2	5.7	0.0
H221	C22	O21	H222	240.0	240.0
H221	C22	O21	H223	120.0	120.0
H222	C22	O21	H223	240.0	240.0
C3	C2	C1	H2	180.0	179.9
C5	C6	C1	C2	357.6	0.4
C6	C1	C2	O20	182.1	179.7
C2	C1	C6	H6	177.6	180.4
C2	C1	O20	H20	95.0	89.9
C4	C5	C6	H5	180.0	179.9
C2	C1	C6	C5	357.6	0.4
C5	C6	C1	O20	179.7	180.1
C1	C6	C5	H6	180.0	180.0
C2	C1	C6	O20	177.9	180.3
C6	C1	C2	H2	181.7	179.7
C1	C6	C5	H5	182.9	180.0
C5	C6	C1	H6	180.0	180.0
C6	C1	O20	H20	272.9	270.2
C2	C1	O20	C6	182.1	179.7
O20	C1	C2	H2	359.6	0.0
O20	C1	C6	H6	359.7	0.0
C7	C8	C13	C9	178.2	179.7
C13	C8	C7	H7	179.1	173.0
C13	C8	C9	N10	5.1	348.6
C13	C8	C9	C14	180.3	168.9
C8	C13	C12	C11	296.7	299.5
C12	C13	C8	H131	240.0	240.6
C12	C13	C8	H132	120.5	119.3
C8	C13	C12	H121	56.7	59.4
C8	C13	C12	H122	177.0	179.7
H131	C13	C8	H132	240.5	238.7
C7	C8	C9	C13	181.7	180.3
C9	C8	C7	H7	357.2	352.7
C9	C8	C13	C12	35.0	40.6
C9	C8	C13	H131	155.0	160.0
C9	C8	C13	H132	274.5	281.2
C11	N10	C9	C8	339.1	1.7
N10	C9	C8	C14	184.8	179.7
C8	C9	C14	C19	112.2	143.2
C8	C9	C14	C15	287.8	323.0
C12	C13	C8	C9	35.0	40.6
C8	C13	C12	H131	120.0	119.4
C8	C13	C12	H132	239.5	240.6
C13	C12	C11	N10	49.4	53.1
C11	C12	C13	H121	240.0	240.1
C11	C12	C13	H122	119.7	119.9
C13	C12	C11	H111	169.4	173.6
C13	C12	C11	H112	288.2	292.5
H131	C13	C12	H132	119.5	121.3
H121	C12	C13	H122	239.7	239.7
C11	C12	C13	H131	176.7	180.2
C11	C12	C13	H132	57.2	58.9
C13	C12	C11	H121	120.0	119.8
C13	C12	C11	H122	240.3	240.2
C12	C11	N10	C9	352.4	336.6
N10	C11	C12	H111	240.0	239.5
N10	C11	C12	H112	121.2	120.6
H121	C12	C11	H122	120.2	120.3
H111	C11	C12	H112	241.2	241.1
C8	C9	N10	C11	339.1	1.7
N10	C11	C12	H121	289.4	293.2
N10	C11	C12	H122	169.2	172.9
C12	C11	N10	H111	120.0	120.5
C12	C11	N10	H112	238.8	239.4
C11	N10	C9	C14	163.4	181.4
H111	C11	N10	H112	118.8	118.9
C8	C9	N10	C14	175.6	180.3
C9	N10	C11	H111	232.4	216.1
C9	N10	C11	H112	113.6	97.2
N10	C9	C14	C19	287.5	323.5
N10	C9	C14	C15	103.1	143.3
C8	C9	C14	N10	184.7	179.7
C19	C14	C9	C15	184.4	180.2
C9	C14	C19	N18	177.5	180.1
C9	C14	C19	H19	357.5	0.0
C9	C14	C15	C16	182.3	179.7
C9	C14	C15	H15	2.3	360.0
C9	C14	C19	C15	175.6	179.8
C19	C14	C15	C16	357.9	359.5
C19	C14	C15	H15	177.9	179.7
C14	C19	N18	C17	359.4	360.0
N18	C19	C14	H19	180.0	180.0
C9	C14	C15	C19	184.4	180.2
C15	C14	C19	N18	1.9	0.3
C15	C14	C19	H19	181.9	180.2
C17	C16	C15	C14	1.2	0.5
C16	C15	C14	H15	180.0	179.8
C14	C15	C16	H16	181.2	180.2
N18	C19	C14	C15	1.9	0.3
C14	C19	N18	H19	180.0	180.0
C19	N18	C17	C16	359.7	0.0
C19	N18	C17	H17	179.6	180.0
C17	N18	C19	H19	179.3	180.0
N18	C17	C16	C15	0.0	359.7
C16	C17	N18	H17	180.0	180.0
N18	C17	C16	H16	180.1	180.0
C14	C15	C16	C17	1.2	0.5
N18	C17	C16	H17	180.0	180.0
C17	C16	C15	H15	181.2	180.3
C15	C16	C17	H16	180.0	179.7
C14	C15	C16	H15	180.0	180.2
C15	C16	C17	H17	180.1	179.8
C17	C16	C15	H16	180.0	180.3
C4	C7	H7	C8	180.0	180.3
H7	C7	C4	C3	334.7	321.8
H7	C7	C4	C5	152.0	141.5
H7	C7	C8	C13	179.1	173.0
H7	C7	C8	C9	357.2	352.7
C4	C5	H5	C6	180.0	180.1
H5	C5	C6	C1	182.9	180.0
H5	C5	C6	H6	2.9	0.1
C3	C2	H2	C1	180.0	180.1
H2	C2	C1	C6	181.7	179.7
H2	C2	C1	O20	359.6	0.0
O21	C22	H221	H222	120.0	120.0
O21	C22	H221	H223	240.0	240.0
H222	C22	H221	H223	120.0	120.0
O21	C22	H222	H221	240.0	240.0
O21	C22	H222	H223	120.0	120.0
H221	C22	H222	H223	240.0	240.0
O21	C22	H223	H221	120.0	120.0
O21	C22	H223	H222	240.0	240.0
H221	C22	H223	H222	120.0	120.0
C5	C6	H6	C1	180.0	180.0
H6	C6	C5	H5	2.9	0.1
H6	C6	C1	O20	359.7	0.0
H131	C13	C8	C9	155.0	160.0
C8	C13	H131	C12	240.9	242.5
C8	C13	H131	H132	120.4	121.3
H131	C13	C12	C11	176.7	180.2
C12	C13	H131	H132	239.5	238.8
H131	C13	C12	H121	296.7	300.0
H131	C13	C12	H122	57.0	60.3
H132	C13	C8	C9	274.5	281.2
C8	C13	H132	C12	119.4	117.5
C8	C13	H132	H131	239.7	238.7
H132	C13	C12	C11	57.2	58.9
C12	C13	H132	H131	120.3	121.3
H132	C13	C12	H121	177.2	178.8
H132	C13	C12	H122	297.4	299.0
C13	C12	H121	C11	239.5	240.5
H121	C12	C13	H131	296.7	300.0
H121	C12	C13	H132	177.2	178.8
C13	C12	H121	H122	119.8	120.2
H121	C12	C11	N10	289.4	293.2
C11	C12	H121	H122	240.3	239.7
H121	C12	C11	H111	49.4	53.8
H121	C12	C11	H112	168.2	172.6
C13	C12	H122	C11	120.3	119.5
H122	C12	C13	H131	57.0	60.3
H122	C12	C13	H132	297.4	299.0
C13	C12	H122	H121	240.1	239.8
H122	C12	C11	N10	169.2	172.9
C11	C12	H122	H121	119.8	120.3
H122	C12	C11	H111	289.2	293.4
H122	C12	C11	H112	48.0	52.3
C12	C11	H111	N10	242.5	237.9
H111	C11	C12	H121	49.4	53.8
H111	C11	C12	H122	289.2	293.4
C12	C11	H111	H112	121.3	118.9
H111	C11	N10	C9	232.4	216.1
N10	C11	H111	H112	238.8	241.0
C12	C11	H112	N10	118.3	122.1
H112	C11	C12	H121	168.2	172.6
H112	C11	C12	H122	48.0	52.3
C12	C11	H112	H111	239.2	241.1
H112	C11	N10	C9	113.6	97.2
N10	C11	H112	H111	120.8	118.9
H19	C19	C14	C15	181.9	180.2
C14	C19	H19	N18	180.0	180.0
H19	C19	N18	C17	179.3	180.0
C14	C15	H15	C16	180.0	179.8
H15	C15	C16	H16	1.2	360.0
N18	C17	H17	C16	180.0	180.0
H17	C17	C16	C15	180.1	179.8
H17	C17	C16	H16	0.1	0.0
C17	C16	H16	C15	180.0	179.7
H16	C16	C17	H17	0.1	0.0
H16	C16	C15	H15	1.2	360.0