Atom Nomenclature for ZY0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZY0

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
C3 C3
C4 C4
C5 C5
C6 C6
C7 C7
N8 N8
O9 O9
C10 C10
C11 C11
C12 C12
O13 O13
C14 C14
C15 C15
N16 N16
C17 C17
C18 C18
C19 C19
C20 C20
C21 C21
C22 C22
C9 C9
C24 C24
C25 C25
C26 C26
N27 N27
C28 C28
O1 O1
C30 C30
N1 N1
C32 C32
C33 C33
C34 C34
C35 C35
C36 C36
C37 C37
C38 C38
C39 C39
C8 C8
F3 F3
F1 F1
F2 F2
C13 C13
H2 H2
H4 H4
H8 H8
H10 H10
H111 H111
H112 H112
H12 H12
H13 H13
H151 H151
H152 H152
H18 H18
H22 H22
H16 H16
H171 H171
H172 H172
H19 H19
H20 H20
H21 H21
H331 H331
H332 H332
HA HA
H251 H251
H252 H252
H30 H30
H321 H321
H322 H322
H323 H323
H35 H35
H39 H39
H36 H36
H37 H37
H241 H241
H242 H242
H281 H281
H282 H282