Atom Nomenclature for ZWZ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZWZ

Atom Name (V3) Atom Name (V2)
OAE OAE
CAK CAK
CAJ CAJ
OAD OAD
CAI CAI
OAC OAC
CAH CAH
CAA CAA
NAG NAG
CAL CAL
CAF CAF
NAB NAB
HOAE HOAE
HAK HAK
HAJ HAJ
HOAD HOAD
HAI HAI
HOAC HOAC
HAH HAH
HAA HAA
HAAA HAAA
HAAB HAAB
HNAG HNAG
HAL HAL
HAF HAF
HAFA HAFA
HNAB HNAB
HNAA HNAA