Atom Nomenclature for ZW3

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZW3

Atom Name (V3) Atom Name (V2)
C1 C1
C2 C2
O3 O3
N4 N4
C5 C5
C6 C6
N7 N7
C8 C8
C9 C9
C10 C10
C11 C11
S12 S12
C13 C13
O14 O14
N15 N15
C16 C16
O17 O17
C18 C18
C19 C19
C20 C20
N21 N21
H11C H11C
H12C H12C
H13C H13C
H4 H4
H6 H6
H8 H8
H10 H10
H18 H18
H15 H15
H19 H19