Atom Nomenclature for ZSC

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZSC

Atom Name (V3) Atom Name (V2)
CAG CAG
CAH CAH
OAJ OAJ
OAK OAK
OAP OAP
OAQ OAQ
CBH CBH
CBI CBI
CBJ CBJ
O2 O2
O1 O1
CBX CBX
CBY CBY
CCF CCF
CCG CCG
CCI CCI
NCS NCS
SCU SCU
HAG HAG
HAGA HAGA
HAGB HAGB
HAH HAH
HAHA HAHA
HAHB HAHB
HBH HBH
HBI HBI
HBJ HBJ
HO2 HNBS
HO1 H2