Atom Nomenclature for ZS4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZS4

Atom Name (V3) Atom Name (V2)
CAQ CAQ
CAR CAR
OAW OAW
CBB CBB
CBA CBA
NAV NAV
CAU CAU
NAP NAP
NAT NAT
CAS CAS
NAY NAY
CAZ CAZ
CAI CAI
OBD OBD
CBC CBC
CAX CAX
NAN NAN
CAO CAO
NAJ NAJ
CAK CAK
CAL CAL
CAM CAM
CAH CAH
CAG CAG
CAF CAF
NAE NAE
CAD CAD
CAC CAC
FA FA
FB FB
HAQ1 HAQ1
HAQ2 HAQ2
HAR1 HAR1
HAR2 HAR2
HBB1 HBB1
HBB2 HBB2
HBA1 HBA1
HBA2 HBA2
HAZ1 HAZ1
HAZ2 HAZ2
HAX1 HAX1
HAX2 HAX2
HAI1 HAI1
HAI2 HAI2
HBC1 HBC1
HBC2 HBC2
HAL HAL
HAM HAM
HAH HAH
HAG HAG
HAC HAC