Atom Nomenclature for ZRW

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZRW

Atom Name (V3) Atom Name (V2)
O1 O1
O10 O2
O11 O3
O12 O4
O13 O5
O14 O6
O15 O7
O16 O8
O17 O9
O18 O10
O19 O11
O1L O12
O2 O13
O20 O14
O21 O15
O22 O16
O23 O17
O24 O18
O25 O19
O26 O20
O27 O21
O28 O22
O29 O23
O2L O24
O3 O25
O30 O26
O31 O27
O32 O28
O33 O29
O34 O30
O35 O31
O36 O32
O37 O33
O38 O34
O39 O35
O3L O36
O4 O37
O40 O38
O41 O39
O42 O40
O43 O41
O44 O42
O45 O43
O46 O44
O47 O45
O48 O46
O49 O47
O4L O48
O5 O49
O50 O50
O51 O51
O52 O52
O53 O53
O54 O54
O55 O55
O56 O56
O57 O57
O6 O58
O7 O59
O8 O60
O9 O61
P1 P1
P2 P2
W1 W1
W10 W2
W11 W3
W12 W4
W13 W5
W14 W6
W15 W7
W16 W8
W17 W9
W2 W10
W3 W11
W4 W12
W5 W13
W6 W14
W7 W15
W8 W16
W9 W17
ZR1 ZR1
H1 H1
H2 H2