Atom Nomenclature for ZR7

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZR7

Atom Name (V3) Atom Name (V2)
O1 O1
C7 C1
C6 C2
C1 C3
N1 N1
C5 C4
C4 C5
C3 C6
C2 C7
O O2
C16 C8
C17 C9
N6 N2
C20 C10
C19 C11
C21 C12
N5 N3
C18 C13
N4 N4
C14 C14
C13 C15
C12 C16
C11 C17
F1 F1
C15 C18
C10 C19
N N5
N7 N6
S S1
C C20
N3 N7
C9 C21
C8 C22
F F2
N2 N8
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20