Atom Nomenclature for ZPX

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZPX

Atom Name (V3) Atom Name (V2)
CAA CAA
CAB CAB
CAC CAC
OAD OAD
OAE OAE
OAF OAF
OAG OAG
OAH OAH
FAI FAI
CAJ CAJ
CAK CAK
CAL CAL
CAM CAM
CAN CAN
CAO CAO
CAP CAP
CAQ CAQ
CAR CAR
CAS CAS
CAT CAT
CAU CAU
CAV CAV
CAW CAW
CAX CAX
CAY CAY
CAZ CAZ
NBA NBA
NBB NBB
NBC NBC
CBD CBD
CBE CBE
CBF CBF
CBG CBG
CBH CBH
CBI CBI
CBJ CBJ
CBK CBK
CBL CBL
CBM CBM
CBN CBN
NBO NBO
NBP NBP
SBQ SBQ
HAA HAA
HAAA HAAA
HAAB HAAB
HAB HAB
HABA HABA
HABB HABB
HAC HAC
HACA HACA
HACB HACB
HOAH HOAH
HAJ HAJ
HAK HAK
HAL HAL
HAM HAM
HAN HAN
HAO HAO
HAP HAP
HAQ HAQ
HAR HAR
HAS HAS
HAT HAT
HAU HAU
HAV HAV
HAW HAW
HAX HAX
HAY HAY
HAYA HAYA
HAZ HAZ
HAZA HAZA
HNBB HNBB
HNBC HNBC
HBL HBL
HBM HBM
HBN HBN