Atom Nomenclature for ZPR

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZPR

Atom Name (V3) Atom Name (V2)
C20 C20
C21 C21
C22 C22
C23 C23
C24 C24
C19 C19
C18 C18
O17 O17
C15 C15
O16 O16
N14 N14
C10 C10
C8 C8
O9 O9
C11 C11
C12 C12
C13 C13
C4 C4
C5 C5
C1 C1
O2 O2
N7 N7
C6 C6
C3 C3
H201 1H20
H211 1H21
H221 1H22
H231 1H23
H241 1H24
H181 1H18
H182 2H18
H101 1H10
H111 1H11
H112 2H11
H121 1H12
H122 2H12
H131 1H13
H132 2H13
H41 1H4
H42 2H4
H51 1H5
H52 2H5
H11 1H1
H61 1H6
H62 2H6
H31 1H3