Atom Nomenclature for ZOL

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZOL

Atom Name (V3) Atom Name (V2)
O17 O17
P14 P14
O16 O16
O15 O15
C8 C8
P9 P9
O10 O10
O11 O11
O12 O12
O13 O13
C7 C7
N15 N15
C16 C16
N17 N17
C18 C18
C19 C19
H17 H17
H1 H1
H10 H10
H11 H11
H13 H13
H71 1H7
H72 2H7
H16 H16
H18 H18
H19 H19