Atom Nomenclature for ZO0

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZO0

Atom Name (V3) Atom Name (V2)
F13 F13
C11 C11
F14 F14
F12 F12
C2 C2
N1 N1
C6 C6
C7 C7
C8 C8
C9 C9
C10 C10
C5 C5
C4 C4
N3 N3
N15 N15
C16 C16
C17 C17
C18 C18
N19 N19
C22 C22
C20 C20
C21 C21
H7 H7
H8 H8
H9 H9
H10 H10
H161 H161
H162 H162
H211 H211
H212 H212
H171 H171
H172 H172
H181 H181
H182 H182
H221 H221
H222 H222
H223 H223
H201 H201
H202 H202