PDB Chemical Component ZMR

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for ZMR

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O1A 1.332 1.215
C1 O1B 1.189 1.347
C1 C2 1.476 1.474
C2 C3 1.350 1.324
C2 O6 1.346 1.356
C3 C4 1.497 1.504
C3 H3 1.080 1.080
C4 C5 1.509 1.532
C4 NE 1.465 1.465
C4 H4 1.100 1.090
C5 N5 1.451 1.465
C5 C6 1.516 1.534
C5 H5 1.100 1.090
N5 C10 1.317 1.347
N5 HN5 1.000 0.970
C10 O10 1.219 1.213
C10 C11 1.516 1.507
C11 H111 1.100 1.090
C11 H112 1.100 1.090
C11 H113 1.100 1.090
C6 O6 1.405 1.430
C6 C7 1.535 1.530
C6 H6 1.100 1.090
C7 O7 1.425 1.428
C7 C8 1.526 1.530
C7 H7 1.100 1.091
O7 HO7 0.950 0.967
C8 O8 1.416 1.429
C8 C9 1.543 1.531
C8 H8 1.100 1.090
O8 HO8 0.950 0.967
C9 O9 1.424 1.429
C9 H91 1.100 1.090
C9 H92 1.100 1.090
O9 HO9 0.950 0.966
NE CZ 1.338 1.375
CZ NH1 1.328 1.304
CZ NH2 1.337 1.375
NH1 HNH1 1.001 0.970
NH2 HN21 1.000 0.971
NH2 HN22 1.000 0.970
O1B HO1B 0.950 0.967
NE HNE 1.000 0.970

Bond Angles for ZMR

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O1A C1 O1B 123.8 120.0
O1A C1 C2 116.2 119.9
O1B C1 C2 120.0 120.0
C1 O1B HO1B 109.5 117.0
C1 C2 C3 119.1 118.6
C1 C2 O6 117.8 118.4
C3 C2 O6 123.0 123.0
C2 C3 C4 120.8 122.3
C2 C3 H3 119.6 118.8
C2 O6 C6 117.7 117.6
C4 C3 H3 119.6 118.9
C3 C4 C5 111.8 109.5
C3 C4 NE 118.6 109.5
C3 C4 H4 105.5 109.5
C5 C4 NE 108.6 109.5
C5 C4 H4 105.4 109.5
C4 C5 N5 104.0 109.7
C4 C5 C6 109.4 108.3
C4 C5 H5 111.0 109.7
NE C4 H4 105.9 109.5
C4 NE CZ 124.0 120.0
C4 NE HNE 118.0 120.0
N5 C5 C6 109.5 109.7
N5 C5 H5 111.9 109.7
C5 N5 C10 123.5 120.1
C5 N5 HN5 118.2 120.0
C6 C5 H5 110.9 109.8
C5 C6 O6 110.7 108.4
C5 C6 C7 113.6 109.7
C5 C6 H6 106.9 109.7
C10 N5 HN5 118.2 120.0
N5 C10 O10 123.3 120.0
N5 C10 C11 115.7 120.0
O10 C10 C11 120.6 120.0
C10 C11 H111 109.5 109.5
C10 C11 H112 109.5 109.5
C10 C11 H113 109.5 109.5
H111 C11 H112 109.5 109.5
H111 C11 H113 109.4 109.5
H112 C11 H113 109.5 109.5
O6 C6 C7 110.4 109.7
O6 C6 H6 108.2 109.5
C7 C6 H6 106.7 109.7
C6 C7 O7 111.8 109.5
C6 C7 C8 113.0 109.5
C6 C7 H7 107.2 109.4
O7 C7 C8 108.8 109.5
O7 C7 H7 108.5 109.5
C7 O7 HO7 109.5 114.0
C8 C7 H7 107.3 109.5
C7 C8 O8 107.3 109.5
C7 C8 C9 114.4 109.5
C7 C8 H8 107.9 109.5
O8 C8 C9 110.1 109.4
O8 C8 H8 109.4 109.5
C8 O8 HO8 109.5 114.1
C9 C8 H8 107.7 109.4
C8 C9 O9 112.4 109.5
C8 C9 H91 108.7 109.5
C8 C9 H92 108.7 109.5
O9 C9 H91 108.7 109.5
O9 C9 H92 108.7 109.4
C9 O9 HO9 109.5 114.0
H91 C9 H92 109.4 109.5
NE CZ NH1 119.8 120.0
NE CZ NH2 119.7 120.0
CZ NE HNE 118.0 120.0
NH1 CZ NH2 120.4 120.0
CZ NH1 HNH1 112.0 120.0
CZ NH2 HN21 120.0 119.9
CZ NH2 HN22 120.0 120.0
HN21 NH2 HN22 120.0 120.0

Torsion Angles for ZMR

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O1B C1 O1A C2 182.3 180.3
O1A C1 O1B HO1B 360.0 0.0
O1A C1 C2 C3 180.7 360.0
O1A C1 C2 O6 359.8 179.8
O1A C1 O1B C2 177.6 179.7
O1B C1 C2 C3 358.4 179.7
O1B C1 C2 O6 177.6 359.5
O1A C1 C2 O1B 182.2 180.3
C2 C1 O1B HO1B 182.4 180.3
C3 C2 C1 O6 180.8 180.2
C1 C2 C3 C4 180.4 179.6
C1 C2 C3 H3 0.4 359.6
C1 C2 O6 C6 197.2 196.4
C1 C2 C3 O6 179.1 179.8
C3 C2 O6 C6 16.3 16.2
C4 C3 C2 H3 180.0 180.0
C2 C3 C4 C5 13.5 17.5
C2 C3 C4 NE 140.9 137.6
C2 C3 C4 H4 259.4 257.5
C1 C2 O6 C3 180.9 180.2
O6 C2 C3 C4 1.3 359.8
O6 C2 C3 H3 181.3 179.8
C5 C6 O6 C2 313.3 312.5
C2 O6 C6 C7 186.6 192.7
C2 O6 C6 H6 70.1 72.2
C4 C3 C2 O6 1.3 359.8
C2 C3 C4 H3 180.0 180.0
C5 C4 C3 NE 232.5 240.0
C5 C4 C3 H4 114.1 120.0
C3 C4 C5 N5 201.3 193.1
C3 C4 C5 C6 318.2 312.8
C3 C4 C5 H5 80.9 72.6
NE C4 C3 H4 241.6 240.0
C3 C4 NE CZ 123.7 85.0
C3 C4 NE HNE 303.7 265.0
H3 C3 C2 O6 181.3 179.8
C2 C3 H3 C4 180.0 180.0
H3 C3 C4 C5 193.4 197.6
H3 C3 C4 NE 320.9 317.6
H3 C3 C4 H4 79.3 77.6
C5 C4 C3 H3 193.4 197.6
C3 C4 C5 NE 132.7 120.0
C3 C4 C5 H4 245.8 240.0
NE C4 C5 H4 113.2 120.0
C5 C4 NE CZ 252.7 205.0
C5 C4 NE HNE 72.7 25.0
N5 C5 C4 C6 243.1 240.3
N5 C5 C4 H5 120.4 120.5
C4 C5 N5 C10 243.1 275.0
C4 C5 N5 HN5 63.1 95.1
C6 C5 C4 H5 237.3 240.3
C4 C5 C6 O6 59.1 62.8
C4 C5 C6 C7 184.1 182.7
C4 C5 C6 H6 301.5 303.3
NE C4 C3 H3 320.9 317.6
C3 C4 NE C5 231.0 240.0
C3 C4 NE H4 118.2 120.0
C5 C4 NE H4 247.2 240.0
NE C4 C5 N5 68.6 73.1
NE C4 C5 C6 185.5 192.8
NE C4 C5 H5 308.2 312.6
C4 NE CZ NH1 345.6 0.0
C4 NE CZ NH2 165.9 180.0
CZ NE C4 HNE 180.0 180.0
H4 C4 C3 H3 79.3 77.6
C3 C4 H4 C5 118.4 120.0
C3 C4 H4 NE 233.5 240.0
C5 C4 H4 NE 115.0 120.0
H4 C4 C5 N5 315.5 313.1
H4 C4 C5 C6 72.3 72.8
H4 C4 C5 H5 195.0 192.6
H4 C4 NE CZ 5.5 325.0
H4 C4 NE HNE 185.5 145.0
N5 C5 C4 NE 68.6 73.1
N5 C5 C4 H4 315.5 313.1
C4 C5 N5 C6 116.9 118.8
C4 C5 N5 H5 240.1 239.5
C6 C5 N5 H5 123.3 120.6
N5 C5 C6 O6 172.5 182.5
N5 C5 C6 C7 297.5 302.4
N5 C5 C6 H6 54.9 63.0
C10 N5 C5 HN5 180.0 179.9
C5 N5 C10 O10 5.2 0.1
C5 N5 C10 C11 192.6 180.0
C2 O6 C6 C5 313.3 312.5
C6 C5 C4 NE 185.5 192.8
C6 C5 C4 H4 72.3 72.8
C4 C5 C6 N5 246.6 240.3
C4 C5 C6 H5 122.8 119.7
N5 C5 C6 H5 236.1 239.4
C6 C5 N5 C10 126.2 156.2
C6 C5 N5 HN5 306.3 336.2
O6 C6 C5 C7 235.1 240.2
O6 C6 C5 H6 117.7 119.5
C7 C6 C5 H6 242.6 239.4
C5 C6 C7 O7 296.0 305.0
C5 C6 C7 C8 172.8 185.0
C5 C6 C7 H7 54.7 65.0
H5 C5 C4 NE 308.2 312.6
H5 C5 C4 H4 195.0 192.6
C4 C5 H5 N5 115.7 120.5
C4 C5 H5 C6 238.2 241.2
N5 C5 H5 C6 122.5 120.6
H5 C5 N5 C10 2.9 35.5
H5 C5 N5 HN5 183.0 215.6
H5 C5 C6 O6 296.4 303.1
H5 C5 C6 C7 61.3 62.9
H5 C5 C6 H6 178.7 183.6
C10 N5 C5 C6 126.2 156.2
C10 N5 C5 H5 2.9 35.5
C5 N5 C10 HN5 180.0 180.1
O10 C10 N5 C11 172.6 180.1
N5 C10 C11 H111 172.8 0.0
N5 C10 C11 H112 292.8 120.0
N5 C10 C11 H113 52.9 240.0
HN5 N5 C5 C6 306.3 336.2
HN5 N5 C5 H5 183.0 215.6
C5 N5 HN5 C10 180.0 179.9
HN5 N5 C10 O10 185.2 180.0
HN5 N5 C10 C11 12.6 359.9
O10 C10 N5 HN5 185.2 180.0
N5 C10 O10 C11 187.7 179.9
O10 C10 C11 H111 360.0 180.0
O10 C10 C11 H112 120.0 299.9
O10 C10 C11 H113 240.0 59.9
C11 C10 N5 HN5 12.6 359.9
N5 C10 C11 O10 172.8 180.1
H111 C11 C10 H112 240.0 240.0
H111 C11 C10 H113 120.0 120.0
H112 C11 C10 H113 240.0 240.0
C10 C11 H111 H112 120.0 120.0
C10 C11 H111 H113 240.0 240.0
H112 C11 H111 H113 120.0 120.0
C10 C11 H112 H111 240.0 240.0
C10 C11 H112 H113 120.0 120.0
H111 C11 H112 H113 240.0 240.0
C10 C11 H113 H111 120.0 120.0
C10 C11 H113 H112 240.0 240.0
H111 C11 H113 H112 120.0 120.0
O6 C6 C5 H5 296.4 303.1
C5 C6 O6 C7 126.7 119.8
C5 C6 O6 H6 243.2 240.3
C7 C6 O6 H6 116.5 120.5
O6 C6 C7 O7 61.0 64.1
O6 C6 C7 C8 297.8 304.1
O6 C6 C7 H7 179.8 184.0
C7 C6 C5 H5 61.3 62.9
C5 C6 C7 O6 234.9 240.9
C5 C6 C7 H6 117.5 120.6
O6 C6 C7 H6 242.6 239.7
O7 C7 C6 C8 123.2 120.0
O7 C7 C6 H7 241.2 240.0
C6 C7 O7 HO7 180.0 299.9
C8 C7 C6 H7 118.0 120.0
C6 C7 C8 O8 302.3 300.0
C6 C7 C8 C9 179.9 180.0
C6 C7 C8 H8 60.0 60.0
H6 C6 C5 H5 178.7 183.6
C5 C6 H6 O6 119.3 118.9
C5 C6 H6 C7 238.1 239.4
O6 C6 H6 C7 118.9 120.5
H6 C6 C7 O7 178.4 184.4
H6 C6 C7 C8 55.3 64.4
H6 C6 C7 H7 297.2 304.3
O7 C7 C6 H6 178.4 184.4
C6 C7 O7 C8 234.5 240.0
C6 C7 O7 H7 118.0 119.9
C8 C7 O7 H7 243.5 240.0
O7 C7 C8 O8 177.5 180.0
O7 C7 C8 C9 55.1 60.0
O7 C7 C8 H8 295.2 300.0
C8 C7 C6 H6 55.3 64.4
C6 C7 C8 O7 124.8 120.0
C6 C7 C8 H7 242.1 240.0
O7 C7 C8 H7 117.3 120.0
C8 C7 O7 HO7 305.6 60.0
O8 C8 C7 C9 122.4 120.0
O8 C8 C7 H8 242.2 239.9
C7 C8 O8 HO8 180.0 300.0
C9 C8 C7 H8 119.8 120.0
C7 C8 C9 O9 68.4 185.0
C7 C8 C9 H91 188.9 305.0
C7 C8 C9 H92 308.0 65.0
H7 C7 C6 H6 297.2 304.3
C6 C7 H7 O7 239.1 240.0
C6 C7 H7 C8 121.7 120.0
O7 C7 H7 C8 242.5 240.0
H7 C7 O7 HO7 62.0 180.0
H7 C7 C8 O8 60.2 59.9
H7 C7 C8 C9 297.8 300.0
H7 C7 C8 H8 178.0 180.0
HO7 O7 C7 C8 305.6 60.0
HO7 O7 C7 H7 62.0 180.0
O8 C8 C7 H7 60.2 59.9
C7 C8 O8 C9 234.9 240.0
C7 C8 O8 H8 116.8 120.1
C9 C8 O8 H8 241.9 240.0
O8 C8 C9 O9 307.5 65.0
O8 C8 C9 H91 68.0 185.0
O8 C8 C9 H92 187.1 305.0
C9 C8 C7 H7 297.8 300.0
C7 C8 C9 O8 120.9 120.0
C7 C8 C9 H8 240.0 240.0
O8 C8 C9 H8 119.2 120.0
C9 C8 O8 HO8 305.1 60.0
O9 C9 C8 H91 239.5 240.0
O9 C9 C8 H92 120.4 120.0
C8 C9 O9 HO9 180.0 180.0
H91 C9 C8 H92 240.9 240.0
H8 C8 C7 H7 178.0 180.0
C7 C8 H8 O8 243.6 239.9
C7 C8 H8 C9 124.0 120.0
O8 C8 H8 C9 240.4 240.0
H8 C8 O8 HO8 63.2 179.9
H8 C8 C9 O9 188.4 305.0
H8 C8 C9 H91 308.8 65.0
H8 C8 C9 H92 67.9 185.0
HO8 O8 C8 C9 305.1 60.0
HO8 O8 C8 H8 63.2 179.9
O9 C9 C8 H8 188.4 305.0
C8 C9 O9 H91 120.5 120.1
C8 C9 O9 H92 239.5 240.0
H91 C9 O9 H92 119.1 120.0
H91 C9 C8 H8 308.8 65.0
C8 C9 H91 O9 237.3 240.0
C8 C9 H91 H92 118.6 120.0
O9 C9 H91 H92 241.4 240.0
H91 C9 O9 HO9 59.5 59.9
H92 C9 C8 H8 67.9 185.0
C8 C9 H92 O9 122.7 120.0
C8 C9 H92 H91 241.4 240.0
O9 C9 H92 H91 118.6 120.0
H92 C9 O9 HO9 300.4 300.0
HO9 O9 C9 H91 59.5 59.9
HO9 O9 C9 H92 300.4 300.0
CZ NE C4 H4 5.5 325.0
C4 NE CZ HNE 180.0 180.0
NH1 CZ NE NH2 179.7 180.1
NE CZ NH1 HNH1 180.3 180.0
NE CZ NH2 HN21 179.7 0.1
NE CZ NH2 HN22 359.8 180.0
NE CZ NH1 NH2 180.3 179.9
NH1 CZ NE HNE 165.6 180.0
NH1 CZ NH2 HN21 360.0 180.0
NH1 CZ NH2 HN22 180.0 359.9
NE CZ NH2 NH1 179.7 180.1
NH2 CZ NE HNE 345.9 360.0
NH2 CZ NH1 HNH1 360.0 0.1
HN21 NH2 CZ HN22 180.0 180.1
HNH1 NH1 CZ NH2 360.0 0.1
CZ NH2 HN21 HN22 180.0 179.9
CZ NH2 HN22 HN21 180.0 180.1
HO1B O1B C1 C2 182.4 180.3
HNE NE C4 H4 185.5 145.0
C4 NE HNE CZ 180.0 180.0
HNE NE CZ NH1 165.6 180.0
HNE NE CZ NH2 345.9 360.0