Atom Nomenclature for ZH4

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZH4

Atom Name (V3) Atom Name (V2)
C10 C10
C13 C13
C15 C15
C17 C17
C20 C20
C21 C21
C22 C22
C24 C24
C26 C26
C28 C28
O01 O01
C02 C02
N03 N03
O04 O04
C05 C05
N06 N06
C07 C07
O08 O08
C09 C09
C11 C11
C12 C12
C14 C14
C16 C16
C18 C18
C19 C19
N23 N23
C25 C25
O27 O27
H10 H10
H20 H20
H22 H22
H24 H24
H26 H26
H28 H28
H28A H28A
H28B H28B
H05 H05
HN06 HN06
H11 H11
H18 H18
H19 H19
HN23 HN23
HN2A HN2A
H25 H25
HO27 HO27