Atom Nomenclature for ZGE

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for ZGE

Atom Name (V3) Atom Name (V2)
O10 O10
C10 C10
C11 C11
N5 N5
C5 C5
C4 C4
N4 N4
C12 C12
N7 N7
N6 N6
C3 C3
F1 F1
C6 C6
O6 O6
C2 C2
C1 C1
O1B O1B
O1A O1A
C7 C7
O7 O7
C8 C8
O8 O8
C9 C9
O9 O9
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
HO1B HO1B