PDB Chemical Component ZDU

Ideal Model

Chemical Description

Name 5-(3-AMINOPROPYL)-2'-DEOXYURIDINE-5'-MONOPHOSPHATE
Formula C12 H20 N3 O8 P
Formal charge 0
Molecular weight 365.276 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 44
Chiral atom count 3
Chiral atoms C4' C1' C3'
Observed leaving atoms OP3 HO3'
Bond count 45
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-(3-aminopropyl)-2'-deoxyuridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-[5-(3-aminopropyl)-2,4-dioxo-pyrimidin-1-yl]-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NCCCC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) NCCCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)CCCN)COP(=O)(O)O)O
InChI descriptor InChI=1S/C12H20N3O8P/c13-3-1-2-7-5-15(12(18)14-11(7)17)10-4-8(16)9(23-10)6-22-24(19,20)21/h5,8-10,16H,1-4,6,13H2,(H,14,17,18)(H2,19,20,21)/t8-,9+,10+/m0/s1
InChIKey descriptor DPQBGKUKUKNQCZ-IVZWLZJFSA-N

Status Information

Last modified 2011-06-04
Created 2005-04-08
Release status REL
Model PDB code 1Z5T
Processing site EBI